RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 MTF2Q9Y483 593 aaPredicted RBP21.74■■□□□ 1.07
TRIM28-201ENST00000253024 PTGESO14684 152 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 ALDH1A2O94788 518 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 HDCP19113 662 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 ZNF410Q86VK4 478 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 SENP8Q96LD8 212 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 NDNQ99608 321 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 RBBP8Q99708 897 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 SMOQ99835 787 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 VCXQ9H320 206 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 MMADHCQ9H3L0 296 aaPredicted RBP21.73■■□□□ 1.07
TRIM28-201ENST00000253024 NMRAL1Q9HBL8 299 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 SSX2IPQ9Y2D8 614 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 ZCWPW2A0A1B0GU75 182 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 AURKAO14965 403 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 BDNFP23560 247 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 GARSP41250 739 aaKnown RBP21.73■■□□□ 1.07
TRIM28-201ENST00000253024 DLG1Q12959 904 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 IRGCQ6NXR0 463 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 SDCCAG8Q86SQ7 713 aaPredicted RBP21.73■■□□□ 1.07
TRIM28-201ENST00000253024 PSTKQ8IV42 348 aaKnown RBP21.73■■□□□ 1.07
TRIM28-201ENST00000253024 SMG8Q8ND04 991 aaKnown RBP21.73■■□□□ 1.07
TRIM28-201ENST00000253024 ZNF483Q8TF39 744 aaPredicted RBP21.73■■□□□ 1.07
TRIM28-201ENST00000253024 MIOSQ9NXC5 875 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 RUVBL2Q9Y230 463 aaKnown RBP21.73■■□□□ 1.07
TRIM28-201ENST00000253024 POMPQ9Y244 141 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 TLL2Q9Y6L7 1015 aa21.73■■□□□ 1.07
TRIM28-201ENST00000253024 LRIG2O94898 1065 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 PIGNO95427 931 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 HNRNPLP14866 589 aaKnown RBP eCLIP21.72■■□□□ 1.07
TRIM28-201ENST00000253024 ZRSR2Q15696 482 aaKnown RBP21.72■■□□□ 1.07
TRIM28-201ENST00000253024 STEAP4Q687X5 459 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 OR52E8Q6IFG1 317 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 LDB1Q86U70 411 aaPredicted RBP21.72■■□□□ 1.07
TRIM28-201ENST00000253024 TTC39CQ8N584 583 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 GDPD5Q8WTR4 605 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 ZNF560Q96MR9 790 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 WDCPQ9H6R7 721 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 LRRC40Q9H9A6 602 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 POMCP01189 267 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 CYP2B6P20813 491 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 SPRP35270 261 aaPredicted RBP21.72■■□□□ 1.07
TRIM28-201ENST00000253024 ACADSBP45954 432 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 PGFP49763 221 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 MRPS22P82650 360 aaKnown RBP21.72■■□□□ 1.07
TRIM28-201ENST00000253024 OLFML2BQ68BL8 750 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 TMA16Q96EY4 203 aaKnown RBP21.72■■□□□ 1.07
TRIM28-201ENST00000253024 HSFY1Q96LI6 401 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 TMEM209Q96SK2 561 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 S100A14Q9HCY8 104 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 NDFIP2Q9NV92 336 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 SFMBT1Q9UHJ3 866 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 PCDHGB4Q9UN71 923 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 PCDHGB5Q9Y5G0 923 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 CAPN8A6NHC0 703 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 G3V2L1 256 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 DCLK1O15075 740 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 LYNP07948 512 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 COX4I1P13073 169 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 AOC1P19801 751 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 SOX11P35716 441 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 GRIA4P48058 902 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 KYAT1Q16773 422 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 ARL13AQ5H913 290 aaPredicted RBP21.72■■□□□ 1.07
TRIM28-201ENST00000253024 UBXN11Q5T124 520 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 SDHAF4Q5VUM1 108 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 ALKAL1Q6UXT8 129 aa21.72■■□□□ 1.07
TRIM28-201ENST00000253024 OTOFQ9HC10 1997 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 ZNF195O14628 629 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 EPHX2P34913 555 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 PSEN1P49768 467 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 DPYSQ14117 519 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 PDE4DIPQ5VU43 2346 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 ZNF354CQ86Y25 554 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 ZMIZ2Q8NF64 920 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 ZSCAN18Q8TBC5 510 aaPredicted RBP21.71■■□□□ 1.07
TRIM28-201ENST00000253024 BRI3BPQ8WY22 251 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 ZNF419Q96HQ0 510 aaPredicted RBP21.71■■□□□ 1.07
TRIM28-201ENST00000253024 GBP5Q96PP8 586 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 TCF7L2Q9NQB0 619 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 C9IYK1 514 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 STAU1O95793 577 aaKnown RBP21.71■■□□□ 1.07
TRIM28-201ENST00000253024 CD4P01730 458 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 BRCC3P46736 316 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 GJA9P57773 515 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 KLF10Q13118 480 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 SV2CQ496J9 727 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 RASIP1Q5U651 963 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 TIFABQ6ZNK6 161 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 TLK2Q86UE8 772 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 CPNE1Q99829 537 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 WDR6Q9NNW5 1121 aaKnown RBP21.71■■□□□ 1.07
TRIM28-201ENST00000253024 CHST12Q9NRB3 414 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 ZDHHC2Q9UIJ5 367 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 TLK1Q9UKI8 766 aa21.71■■□□□ 1.07
TRIM28-201ENST00000253024 DAB1O75553 588 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 PGM3O95394 542 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 SCNN1GP51170 649 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 MFSD10Q14728 455 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 ESRP1Q6NXG1 681 aaKnown RBP21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms