RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 ZDHHC2Q9UIJ5 367 aa12.2□□□□□ -0.46
USHBP1-201ENST00000252597 DOLKQ9UPQ8 538 aa12.2□□□□□ -0.46
USHBP1-201ENST00000252597 TLL2Q9Y6L7 1015 aa12.2□□□□□ -0.46
USHBP1-201ENST00000252597 BCLAF3A2AJT9 711 aaKnown RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 ZNF839A8K0R7 811 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 IRF6O14896 467 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 PIGRP01833 764 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 TFPTP0C1Z6 253 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 PCSK6P29122 969 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 CDH5P33151 784 aaPredicted RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 RPL5P46777 297 aaKnown RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 CDKL1Q00532 357 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 C16orf72Q14CZ0 275 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 IL23RQ5VWK5 629 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 AAGABQ6PD74 315 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 SPATA22Q8NHS9 363 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 ACTRT2Q8TDY3 377 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 ZFAND2BQ8WV99 257 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 JADE3Q92613 823 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 LENG1Q96BZ8 264 aaPredicted RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 ELMO2Q96JJ3 720 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 ZNF512Q96ME7 567 aaPredicted RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 GCOM2Q9BZD3 368 aaPredicted RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 NOL11Q9H8H0 719 aaKnown RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 ELP3Q9H9T3 547 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 XPR1Q9UBH6 696 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 ITGA11Q9UKX5 1188 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 SF3B1O75533 1304 aaKnown RBP eCLIP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 ZBTB24O43167 697 aaPredicted RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 TIPRLO75663 272 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 UGT1A6P19224 532 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 TFEBP19484 476 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 ME2P23368 584 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 CEACAM7Q14002 265 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 NCBP2-AS2Q69YL0 99 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 OLFML1Q6UWY5 402 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 B3GNT6Q6ZMB0 384 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 CATSPERGQ6ZRH7 1159 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 OTOP3Q7RTS5 596 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 NAT16Q8N8M0 369 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 OR9I1Q8NGQ6 314 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 PDCD6IPQ8WUM4 868 aaKnown RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 DGCR14Q96DF8 476 aaKnown RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 ZBED3Q96IU2 234 aaPredicted RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 VPS39Q96JC1 886 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 NIFKQ9BYG3 293 aaKnown RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 PSMD13Q9UNM6 376 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 DOCK5Q9H7D0 1870 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 EEF1B2P24534 225 aaKnown RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 MAP3K7CLP57077 242 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 TPI1P60174 286 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 MPP1Q00013 466 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 MAP3K10Q02779 954 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 C16orf89Q6UX73 402 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 LPCAT2Q7L5N7 544 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 LDB1Q86U70 411 aaPredicted RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 APLFQ8IW19 511 aaPredicted RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 TMEM174Q8WUU8 243 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 CYGBQ8WWM9 190 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 FAM167AQ96KS9 214 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 FTHL17Q9BXU8 183 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 GBA2Q9HCG7 927 aaPredicted RBP12.19□□□□□ -0.46
USHBP1-201ENST00000252597 ATXN10Q9UBB4 475 aa12.19□□□□□ -0.46
USHBP1-201ENST00000252597 FAM189A1O60320 539 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 IL18RAPO95256 599 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 NCAM1P13591 858 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 NFKB1P19838 968 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 NMBRP28336 390 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 EPHX2P34913 555 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 SERPINB8P50452 374 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 ADARP55265 1226 aaKnown RBP12.18□□□□□ -0.46
USHBP1-201ENST00000252597 MBTD1Q05BQ5 628 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 TUBB3Q13509 450 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 SYPL2Q5VXT5 272 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 LCLAT1Q6UWP7 414 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 CLVS1Q8IUQ0 354 aaPredicted RBP12.18□□□□□ -0.46
USHBP1-201ENST00000252597 OSMRQ99650 979 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 SYT17Q9BSW7 474 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 DDIT4Q9NX09 232 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 GIMAP2Q9UG22 337 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 PGAP2Q9UHJ9 254 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 PPME1Q9Y570 386 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 COL2A1P02458 1487 aaPredicted RBP12.18□□□□□ -0.46
USHBP1-201ENST00000252597 MT-CYBP00156 380 aaPredicted RBP12.18□□□□□ -0.46
USHBP1-201ENST00000252597 CDH13P55290 713 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 LSAMPQ13449 338 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 RPS6KA2Q15349 733 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 LRRC8BQ6P9F7 803 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 PIGZQ86VD9 579 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 AFG1LQ8WV93 481 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 LRRC39Q96DD0 335 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 GPR20Q99678 358 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 ZNF670Q9BS34 389 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 FRMD8Q9BZ67 464 aaPredicted RBP12.18□□□□□ -0.46
USHBP1-201ENST00000252597 COQ10BQ9H8M1 238 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 LRRC40Q9H9A6 602 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 EFCAB1Q9HAE3 211 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 LMCD1Q9NZU5 365 aa12.18□□□□□ -0.46
USHBP1-201ENST00000252597 RGSL1A5PLK6 1076 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 FAM72CH0Y354 149 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms