RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ALFQ53S48 1182 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 PLEKHG4Q58EX7 1191 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SH3D19Q5HYK7 790 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 METTL23Q86XA0 190 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TMEM132CQ8N3T6 1108 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TGFBRAP1Q8WUH2 860 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SEC14L1Q92503 715 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 DPF3Q92784 378 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ASB9Q96DX5 294 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF594Q96JF6 807 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ADI1Q9BV57 179 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SLITRK2Q9H156 845 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 STK32BQ9NY57 414 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 IRAK3Q9Y616 596 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 RPS6KL1Q9Y6S9 549 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 DUSP10Q9Y6W6 482 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CHST10O43529 356 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 DCXO43602 365 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TSC22D2O75157 780 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 BMP3P12645 472 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 RPA3P35244 121 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ALDH9A1P49189 494 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 AP2S1P53680 142 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 MKRN4PQ13434 485 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 GARNL3Q5VVW2 1013 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SULT1C3Q6IMI6 304 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 DSTYKQ6XUX3 929 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ATG16L2Q8NAA4 619 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 MCOLN3Q8TDD5 553 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 PPP1R10Q96QC0 940 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TMEM117Q9H0C3 514 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 RNF38Q9H0F5 515 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ZCWPW1Q9H0M4 648 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ADAMTS10Q9H324 1103 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 PRKAG3Q9UGI9 489 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TBC1D30Q9Y2I9 924 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 NID2Q14112 1375 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 FAM240BA0A1B0GVZ2 78 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 FAM47E-STBD1D6RA91 191 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 H0YAE9 185 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SCELO95171 688 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 M6PRP20645 277 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 YWHABP31946 246 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 RPS6P62753 249 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 BST1Q10588 318 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 STRIP1Q5VSL9 837 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 URGCPQ8TCY9 931 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 THUMPD3Q9BV44 507 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 PUS3Q9BZE2 481 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ACTR6Q9GZN1 396 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TAS2R7Q9NYW3 318 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 MAB21L2Q9Y586 359 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ABCA6Q8N139 1617 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 NPHP4O75161 1426 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 EXTL3O43909 919 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 RPS9P46781 194 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 GEMP55040 296 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 NDUFAF6Q330K2 333 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 NADK2Q4G0N4 442 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 KHDC1Q4VXA5 237 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 GPIHBP1Q8IV16 184 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TDRD1Q9BXT4 1180 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SPDYE5A6NIY4 337 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 UGT1A9O60656 530 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 LBPP18428 481 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 UGT1A6P19224 532 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 UGT1A1P22309 533 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 UGT1A4P22310 534 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 UGT1A3P35503 534 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 UGT1A5P35504 534 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 MCAMP43121 646 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 STARP49675 285 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CYP1B1Q16678 543 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CHCHD4Q8N4Q1 142 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 RFT1Q96AA3 541 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 IFT43Q96FT9 208 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ZC3H10Q96K80 434 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 MED10Q9BTT4 135 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 REEP1Q9H902 201 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 UGT1A7Q9HAW7 530 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 UGT1A10Q9HAW8 530 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 UGT1A8Q9HAW9 530 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 PKD2L1Q9P0L9 805 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SAMD4AQ9UPU9 718 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CHKBQ9Y259 395 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ITM2AO43736 263 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 AVILO75366 819 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SLC2A3P11169 496 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 FGFR3P22607 806 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 GPC3P51654 580 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 HKDC1Q2TB90 917 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TTLL9Q3SXZ7 439 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 LRRC24Q50LG9 513 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 C16orf46Q6P387 395 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TMEM179Q6ZVK1 233 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 DCP2Q8IU60 420 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CACTIN-AS1Q8N1I8 211 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 NXNL1Q96CM4 212 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 PPP1R36Q96LQ0 422 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SNX18Q96RF0 628 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms