RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 DENND5AQ6IQ26 1287 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 BRINP3Q76B58 766 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 DYMQ7RTS9 669 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 PAGE2Q7Z2X7 111 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 OR8H3Q8N146 312 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 NLGN1Q8N2Q7 840 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 VGLL2Q8N8G2 317 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 KYQ8NBH2 561 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 INTS12Q96CB8 462 aaKnown RBP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 WACQ9BTA9 647 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 NUAK2Q9H093 628 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 MCCC2Q9HCC0 563 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 IFT46Q9NQC8 304 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 CATSPERZQ9NTU4 200 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 SPATA31A6Q5VVP1 1343 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 SHOXO15266 292 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 HOXA2O43364 376 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 WDR47O94967 919 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 FOSP01100 380 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 IFNB1P01574 187 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 FGFR3P22607 806 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 ADSSP30520 456 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 HTR7P34969 479 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 INPP1P49441 399 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 SLC18A2Q05940 514 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 TARDBPQ13148 414 aaKnown RBP eCLIP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 SP140Q13342 867 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 PPP2R5DQ14738 602 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 SPANXN2Q5MJ10 180 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 PDPK2PQ6A1A2 396 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 ARHGAP36Q6ZRI8 547 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 COPS6Q7L5N1 327 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 EFL1Q7Z2Z2 1120 aaKnown RBP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 LINC00518Q8N0U6 118 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 MAGEB6Q8N7X4 407 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 XAGE3Q8WTP9 111 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 BAP1Q92560 729 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 GLT1D1Q96MS3 346 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 PDCD10Q9BUL8 212 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 C6orf62Q9GZU0 229 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 SLC6A17Q9H1V8 727 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 CAB39LQ9H9S4 337 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 KCNK13Q9HB14 408 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 KMT5AQ9NQR1 393 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 DPP7Q9UHL4 492 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 C2orf71A6NGG8 1288 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 MINDY4BA8MYZ0 360 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 E7ENX8 843 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 IRS4O14654 1257 aaPredicted RBP5.84□□□□□ -1.48
SCN1A-216ENST00000637968 SORBS3O60504 671 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 PTTG1O95997 202 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 GH2P01242 217 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 FBLN1P23142 703 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 CSTF2P33240 577 aaKnown RBP eCLIP5.84□□□□□ -1.48
SCN1A-216ENST00000637968 ADD2P35612 726 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 ATP2C1P98194 919 aaPredicted RBP5.84□□□□□ -1.48
SCN1A-216ENST00000637968 ALDH6A1Q02252 535 aaKnown RBP5.84□□□□□ -1.48
SCN1A-216ENST00000637968 DMC1Q14565 340 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 HSD17B12Q53GQ0 312 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 RALGPS1Q5JS13 557 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 AGAP6Q5VW22 663 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 FAM83AQ86UY5 434 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 P3H2Q8IVL5 708 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF34Q8IZ26 560 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 PARP8Q8N3A8 854 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 SVOPQ8N4V2 548 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 FBXL6Q8N531 539 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 CPSF7Q8N684 471 aaKnown RBP5.84□□□□□ -1.48
SCN1A-216ENST00000637968 EFCAB3Q8N7B9 438 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 CNDP1Q96KN2 507 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 AGAP4Q96P64 663 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 DGCR6LQ9BY27 220 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 EPB41L4BQ9H329 900 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 NXF1Q9UBU9 619 aaKnown RBP5.84□□□□□ -1.48
SCN1A-216ENST00000637968 MALT1Q9UDY8 824 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 IPO11Q9UI26 975 aaKnown RBP5.84□□□□□ -1.48
SCN1A-216ENST00000637968 AURKCQ9UQB9 309 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 SF3B1O75533 1304 aaKnown RBP eCLIP5.84□□□□□ -1.48
SCN1A-216ENST00000637968 CEP152O94986 1710 aa5.84□□□□□ -1.48
SCN1A-216ENST00000637968 ABCC3O15438 1527 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 A0A1B0GW55 424 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 H7C2Y5 167 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 B4GALT4O60513 344 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 JRKO75564 520 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DUX4L2P0CJ85 424 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DUX4L3P0CJ86 424 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DUX4L4P0CJ87 422 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DUX4L5P0CJ88 424 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DUX4L6P0CJ89 424 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DUX4L7P0CJ90 424 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 MSH3P20585 1137 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TBXAS1P24557 533 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DCKP27707 260 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ERP29P30040 261 aaKnown RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TPMTP51580 245 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 EIF6P56537 245 aaKnown RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 MYL6P60660 151 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 SLC13A2Q13183 592 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF181Q2M3W8 571 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DCLRE1AQ6PJP8 1040 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms