RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PI4KAP42356 2102 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 DNTTP04053 509 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 KRT3P12035 628 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 ACSL1P33121 698 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 STK19P49842 368 aaPredicted RBP19.78■□□□□ 0.76
CLN3-260ENST00000637578 ATP11AP98196 1134 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 C1QBPQ07021 282 aaKnown RBP19.78■□□□□ 0.76
CLN3-260ENST00000637578 RAB6CQ53S08 254 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 LRRC31Q6UY01 552 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 USP30Q70CQ3 517 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 STRADAQ7RTN6 431 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 PHLDB2Q86SQ0 1253 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 SETD3Q86TU7 594 aaPredicted RBP19.78■□□□□ 0.76
CLN3-260ENST00000637578 FAM131BQ86XD5 332 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 RAB6CQ9H0N0 254 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 AIPL1Q9NZN9 384 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 SIGLEC16A6NMB1 481 aa19.77■□□□□ 0.76
CLN3-260ENST00000637578 E9PAM4 449 aa19.77■□□□□ 0.76
CLN3-260ENST00000637578 GJB6O95452 261 aa19.77■□□□□ 0.76
CLN3-260ENST00000637578 ENGP17813 658 aa19.77■□□□□ 0.76
CLN3-260ENST00000637578 SDC4P31431 198 aa19.77■□□□□ 0.76
CLN3-260ENST00000637578 RFC1P35251 1148 aaPredicted RBP19.77■□□□□ 0.76
CLN3-260ENST00000637578 ADRA1BP35368 520 aa19.77■□□□□ 0.76
CLN3-260ENST00000637578 ASIC2Q16515 512 aa19.77■□□□□ 0.76
CLN3-260ENST00000637578 C15orf59Q2T9L4 293 aaPredicted RBP19.77■□□□□ 0.76
CLN3-260ENST00000637578 SH3PXD2AQ5TCZ1 1133 aa19.77■□□□□ 0.76
CLN3-260ENST00000637578 RNF219Q5W0B1 726 aaPredicted RBP19.77■□□□□ 0.76
CLN3-260ENST00000637578 C1orf216Q8TAB5 229 aa19.77■□□□□ 0.76
CLN3-260ENST00000637578 PABPC3Q9H361 631 aaKnown RBP19.77■□□□□ 0.76
CLN3-260ENST00000637578 PPARGC1AQ9UBK2 798 aaKnown RBP19.77■□□□□ 0.76
CLN3-260ENST00000637578 SUSD2Q9UGT4 822 aa19.77■□□□□ 0.76
CLN3-260ENST00000637578 GOLGA6L3A6NEY3 463 aa19.76■□□□□ 0.75
CLN3-260ENST00000637578 ATP9BO43861 1147 aa19.76■□□□□ 0.75
CLN3-260ENST00000637578 CFIP05156 583 aa19.76■□□□□ 0.75
CLN3-260ENST00000637578 MAOBP27338 520 aa19.76■□□□□ 0.75
CLN3-260ENST00000637578 NNMTP40261 264 aa19.76■□□□□ 0.75
CLN3-260ENST00000637578 NRG1Q02297 640 aaPredicted RBP19.76■□□□□ 0.75
CLN3-260ENST00000637578 TTC31Q49AM3 519 aaPredicted RBP19.76■□□□□ 0.75
CLN3-260ENST00000637578 PPM1JQ5JR12 505 aa19.76■□□□□ 0.75
CLN3-260ENST00000637578 DCAF12L1Q5VU92 463 aa19.76■□□□□ 0.75
CLN3-260ENST00000637578 ACAD10Q6JQN1 1059 aa19.76■□□□□ 0.75
CLN3-260ENST00000637578 FAM124AQ86V42 546 aa19.76■□□□□ 0.75
CLN3-260ENST00000637578 PSMB7Q99436 277 aa19.76■□□□□ 0.75
CLN3-260ENST00000637578 SGK2Q9HBY8 427 aa19.76■□□□□ 0.75
CLN3-260ENST00000637578 MPP6Q9NZW5 540 aa19.76■□□□□ 0.75
CLN3-260ENST00000637578 C10orf142B7Z368 130 aa19.75■□□□□ 0.75
CLN3-260ENST00000637578 RNASEH1O60930 286 aaKnown RBP19.75■□□□□ 0.75
CLN3-260ENST00000637578 HDAC4P56524 1084 aa19.75■□□□□ 0.75
CLN3-260ENST00000637578 GFPT1Q06210 699 aaPredicted RBP19.75■□□□□ 0.75
CLN3-260ENST00000637578 TBX2Q13207 712 aaPredicted RBP19.75■□□□□ 0.75
CLN3-260ENST00000637578 CST6Q15828 149 aa19.75■□□□□ 0.75
CLN3-260ENST00000637578 PPP1R15BQ5SWA1 713 aa19.75■□□□□ 0.75
CLN3-260ENST00000637578 DAB2IPQ5VWQ8 1189 aa19.75■□□□□ 0.75
CLN3-260ENST00000637578 WDR59Q6PJI9 974 aa19.75■□□□□ 0.75
CLN3-260ENST00000637578 RGL4Q8IZJ4 473 aa19.75■□□□□ 0.75
CLN3-260ENST00000637578 SYN2Q92777 582 aaPredicted RBP19.75■□□□□ 0.75
CLN3-260ENST00000637578 BTBD1Q9H0C5 482 aa19.75■□□□□ 0.75
CLN3-260ENST00000637578 OSBPL2Q9H1P3 480 aa19.75■□□□□ 0.75
CLN3-260ENST00000637578 C6orf106Q9H6K1 298 aaPredicted RBP19.75■□□□□ 0.75
CLN3-260ENST00000637578 VPS28Q9UK41 221 aa19.75■□□□□ 0.75
CLN3-260ENST00000637578 HS3ST2Q9Y278 367 aa19.75■□□□□ 0.75
CLN3-260ENST00000637578 SPTBN2O15020 2390 aa19.75■□□□□ 0.75
CLN3-260ENST00000637578 MEI4A8MW99 385 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 ARHGAP33O14559 1287 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 TPM1P09493 284 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 GNSP15586 552 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 NUMBP49757 651 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 ELAVL3Q14576 367 aaKnown RBP19.74■□□□□ 0.75
CLN3-260ENST00000637578 MANEALQ5VSG8 457 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 MMAAQ8IVH4 418 aaKnown RBP19.74■□□□□ 0.75
CLN3-260ENST00000637578 MCOLN2Q8IZK6 566 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 STK40Q8N2I9 435 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 VCPIP1Q96JH7 1222 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 SELENOOQ9BVL4 669 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 RETREG1Q9H6L5 497 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 GRPEL1Q9HAV7 217 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 FSCN3Q9NQT6 498 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 SEPT11Q9NVA2 429 aaKnown RBP19.74■□□□□ 0.75
CLN3-260ENST00000637578 OR12D3Q9UGF7 316 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 ADAMTS1Q9UHI8 967 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 PCDH15Q96QU1 1955 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 NCOR2Q9Y618 2525 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 CNOT1A5YKK6 2376 aaKnown RBP19.74■□□□□ 0.75
CLN3-260ENST00000637578 NUMA1Q14980 2115 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 MID1O15344 667 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 SRGAP2O75044 1071 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 SEMA4FO95754 770 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 RHOCP08134 193 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 SKILP12757 684 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 VAV1P15498 845 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 PRKCIP41743 596 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 KLHL30Q0D2K2 578 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 CDO1Q16878 200 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 ARL13BQ3SXY8 428 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 C6orf118Q5T5N4 469 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 ZNF783Q6ZMS7 281 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 SH2D3CQ8N5H7 860 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 ZYG11BQ9C0D3 744 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 MUC3BQ9H195 1237 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 HAUS4Q9H6D7 363 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms