RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 RHOCP08134 193 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 CYLC1P35663 651 aaPredicted RBP18.76■□□□□ 0.59
CLN3-259ENST00000637551 ARHGAP25P42331 645 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 DPP6P42658 865 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 YBEYP58557 167 aaPredicted RBP18.76■□□□□ 0.59
CLN3-259ENST00000637551 SFSWAPQ12872 951 aaKnown RBP18.76■□□□□ 0.59
CLN3-259ENST00000637551 FNDC3BQ53EP0 1204 aaKnown RBP18.76■□□□□ 0.59
CLN3-259ENST00000637551 ALFQ53S48 1182 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 LAIR1Q6GTX8 287 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 ANO7Q6IWH7 933 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 TMTC1Q8IUR5 882 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 RTL3Q8N8U3 475 aaKnown RBP18.76■□□□□ 0.59
CLN3-259ENST00000637551 OR2T3Q8NH03 318 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 RFFLQ8WZ73 363 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 MRGPRX3Q96LB0 322 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 CHP1Q99653 195 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 RCOR3Q9P2K3 495 aaPredicted RBP18.76■□□□□ 0.59
CLN3-259ENST00000637551 MYO1AQ9UBC5 1043 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 SLC25A13Q9UJS0 675 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 ANAPC7Q9UJX3 599 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 VPS28Q9UK41 221 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 RAB23Q9ULC3 237 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 USP18Q9UMW8 372 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 AP4E1Q9UPM8 1137 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 ERVW-1Q9UQF0 538 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 EDDM13A0A1B0GTR0 161 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 ZSCAN5CA6NGD5 496 aaPredicted RBP18.75■□□□□ 0.59
CLN3-259ENST00000637551 ALOX15BO15296 676 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 ATP9BO43861 1147 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 FOXD2O60548 495 aaPredicted RBP18.75■□□□□ 0.59
CLN3-259ENST00000637551 CNTN5O94779 1100 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 GABRG2P18507 467 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 MIPP30301 263 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 P2RY2P41231 377 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 HADHBP55084 474 aaKnown RBP18.75■□□□□ 0.59
CLN3-259ENST00000637551 DPYSL2Q16555 572 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 SCYL2Q6P3W7 929 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 ARFGAP1Q8N6T3 406 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 MRGPRX1Q96LB2 322 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 MUC3BQ9H195 1237 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 SMG5Q9UPR3 1016 aaKnown RBP18.75■□□□□ 0.59
CLN3-259ENST00000637551 R4GN57 208 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 SPTBN2O15020 2390 aa18.75■□□□□ 0.59
CLN3-259ENST00000637551 FAM170AA1A519 330 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 SRGAP2O75044 1071 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 IPO7O95373 1038 aaKnown RBP18.74■□□□□ 0.59
CLN3-259ENST00000637551 EPHX1P07099 455 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 PRKCHP24723 683 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 IRAK1P51617 712 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 GNA12Q03113 381 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 PARP15Q460N3 678 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 RAB6CQ53S08 254 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 RETSATQ6NUM9 610 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 SLC36A4Q6YBV0 504 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 CYP4V2Q6ZWL3 525 aaPredicted RBP18.74■□□□□ 0.59
CLN3-259ENST00000637551 CIR1Q86X95 450 aaPredicted RBP18.74■□□□□ 0.59
CLN3-259ENST00000637551 VSIG1Q86XK7 387 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 UMODL1-AS1Q8N2C9 162 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 GPR161Q8N6U8 529 aaKnown RBP18.74■□□□□ 0.59
CLN3-259ENST00000637551 CASKIN2Q8WXE0 1202 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 RAB6CQ9H0N0 254 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 PCED1AQ9H1Q7 454 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 TMPRSS4Q9NRS4 437 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 MPP6Q9NZW5 540 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 USP36Q9P275 1121 aaKnown RBP18.74■□□□□ 0.59
CLN3-259ENST00000637551 BCCIPQ9P287 314 aaKnown RBP eCLIP18.74■□□□□ 0.59
CLN3-259ENST00000637551 CTTNBP2NLQ9P2B4 639 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 PCDHGA5Q9Y5G8 931 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 CFAP47Q6ZTR5 3102 aa18.74■□□□□ 0.59
CLN3-259ENST00000637551 A0A0A6YYK5 440 aaPredicted RBP18.73■□□□□ 0.59
CLN3-259ENST00000637551 HRO43593 1189 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 PROSCO94903 275 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 NDUFV2P19404 249 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 MZF1P28698 734 aaPredicted RBP18.73■□□□□ 0.59
CLN3-259ENST00000637551 EPHB2P29323 1055 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 OXTRP30559 389 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 GGCXP38435 758 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 DMWDQ09019 674 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 SIM2Q14190 667 aaPredicted RBP18.73■□□□□ 0.59
CLN3-259ENST00000637551 ELAVL3Q14576 367 aaKnown RBP18.73■□□□□ 0.59
CLN3-259ENST00000637551 SPA17Q15506 151 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 ELF2Q15723 593 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 HADHQ16836 314 aaKnown RBP18.73■□□□□ 0.59
CLN3-259ENST00000637551 KIAA1211LQ6NV74 962 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 POLNQ7Z5Q5 900 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 PLPP6Q8IY26 295 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 APCDD1Q8J025 514 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 TXLNBQ8N3L3 684 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 LZTR1Q8N653 840 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 FAM71BQ8TC56 605 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 HMGB4Q8WW32 186 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 SORCS1Q8WY21 1168 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 ARHGEF26Q96DR7 871 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 CCDC114Q96M63 670 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 SNRNP25Q9BV90 132 aaKnown RBP18.73■□□□□ 0.59
CLN3-259ENST00000637551 ACE2Q9BYF1 805 aaPredicted RBP18.73■□□□□ 0.59
CLN3-259ENST00000637551 TRIM7Q9C029 511 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 CEP44Q9C0F1 390 aa18.73■□□□□ 0.59
CLN3-259ENST00000637551 RSPH9Q9H1X1 276 aaPredicted RBP18.73■□□□□ 0.59
CLN3-259ENST00000637551 ZWILCHQ9H900 591 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms