RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 IGKV6D-21A0A0A0MT36 114 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CD4P01730 458 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 LYNP07948 512 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CYP2C9P11712 490 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 HOXB8P17481 243 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ADSLP30566 484 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CNR2P34972 360 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PNPLA4P41247 253 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ABL2P42684 1182 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 NDST1P52848 882 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SLC12A2P55011 1212 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ABCE1P61221 599 aaKnown RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 IGBP1P78318 339 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SEMA5AQ13591 1074 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ARL13BQ3SXY8 428 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 MDH1BQ5I0G3 518 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CES4AQ5XG92 561 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SLC9A4Q6AI14 798 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TXNRD3NBQ6F5E7 133 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 EFCAB12Q6NXP0 572 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 LRRC8BQ6P9F7 803 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 RSPO2Q6UXX9 243 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 FAM183BPQ6ZVS7 135 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 DNAAF3Q8N9W5 541 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 OR6B3Q8NGW1 331 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 HTR3CQ8WXA8 447 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 FAR2Q96K12 515 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TNIP3Q96KP6 325 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 C11orf84Q9BUA3 381 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 NFKBIZQ9BYH8 718 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ILKAPQ9H0C8 392 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 FZD8Q9H461 694 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 XPNPEP3Q9NQH7 507 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 KLHL8Q9P2G9 620 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ZNF214Q9UL59 606 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PLXNA4Q9HCM2 1894 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ABHD14A-ACY1A0A1B0GW23 586 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 GOLGA8CPA6NN73 597 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 LACTBL1A8MY62 500 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 E5RJQ4 531 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 E9PAM4 449 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PEX1O43933 1283 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CCNT2O60583 730 aaKnown RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 MYCP01106 439 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PROS1P07225 676 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CRABP2P29373 138 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CDC25CP30307 473 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CSE1LP55060 971 aaKnown RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 BST2Q10589 180 aaKnown RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CNGA3Q16281 694 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 FAXCQ5TGI0 409 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 NPNTQ6UXI9 565 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PACS1Q6VY07 963 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TMEM126BQ8IUX1 230 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 IQCF2Q8IXL9 164 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SIX6OS1Q8N1H7 587 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 LRRC71Q8N4P6 559 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 WDTC1Q8N5D0 677 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 RIN3Q8TB24 985 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 GDPD5Q8WTR4 605 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PTPRN2Q92932 1015 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 BADQ92934 168 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PGBD4Q96DM1 585 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SCYL1Q96KG9 808 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 FAM84AQ96KN4 292 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SNRNP25Q9BV90 132 aaKnown RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TRIM15Q9C019 465 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ELOVL4Q9GZR5 314 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 XYLT2Q9H1B5 865 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PRDM12Q9H4Q4 367 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 C10orf88Q9H8K7 445 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PLEKHA5Q9HAU0 1116 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 DDX43Q9NXZ2 648 aaKnown RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CNTN3Q9P232 1028 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 RIPK3Q9Y572 518 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TCRBV7S3A2A0A539 114 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 PRR23AA6NEV1 266 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 TRPC5OSA6NMA1 111 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 PLIN3O60664 434 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 SNNO75324 88 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 ENDOD1O94919 500 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 UQCRBP14927 111 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 GM2AP17900 193 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 PAMP19021 973 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 DNAJB1P25685 340 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 GPD2P43304 727 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 RGS7P49802 495 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 CHN2P52757 468 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 AIF1P55008 147 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 SESN2P58004 480 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 RPL10AP62906 217 aaKnown RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 INCA1Q0VD86 236 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 TBL3Q12788 808 aaKnown RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 FAM187BQ17R55 369 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 JADE1Q6IE81 842 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 BNC2Q6ZN30 1099 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 DENND5BQ6ZUT9 1274 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 RAPH1Q70E73 1250 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms