RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 CHD5Q8TDI0 1954 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 ZNF318Q5VUA4 2279 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 CACNA1IQ9P0X4 2223 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 PALMO75781 387 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 KDELR1P24390 212 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 NTSR1P30989 418 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 ARSEP51690 589 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 ECT2LQ008S8 904 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 MTAPQ13126 283 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 DPYSQ14117 519 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 DPYSL3Q14195 570 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 POLD3Q15054 466 aaPredicted RBP19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 FNDC3BQ53EP0 1204 aaKnown RBP19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 EOGTQ5NDL2 527 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 PEX26Q7Z412 305 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 CCDC33Q8N5R6 958 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 LRRC57Q8N9N7 239 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 DCAF4L2Q8NA75 395 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 IL17RCQ8NAC3 791 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 OR7D4Q8NG98 312 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 CYB5D2Q8WUJ1 264 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 SORCS1Q8WY21 1168 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 TSC1Q92574 1164 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 SPON2Q9BUD6 331 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 ATP13A1Q9HD20 1204 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 NDFIP2Q9NV92 336 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 THAP10Q9P2Z0 257 aaPredicted RBP19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 SLC25A13Q9UJS0 675 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 AMFRQ9UKV5 643 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 OR51B4Q9Y5P0 310 aa19.59■□□□□ 0.73
SQSTM1-216ENST00000626660 A0A0D9SEW6 157 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 AMPD1P23109 780 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 NNMTP40261 264 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 CCR3P51677 355 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 YBEYP58557 167 aaPredicted RBP19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 GAS6Q14393 721 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 ZNF234Q14588 700 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 IL31Q6EBC2 164 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 TMCO3Q6UWJ1 677 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 ZNF354CQ86Y25 554 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 UMODL1-AS1Q8N2C9 162 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 LZTR1Q8N653 840 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 TXNDC5Q8NBS9 432 aaKnown RBP19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 ALG14Q96F25 216 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 ALS2CR12Q96Q35 445 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 ZDHHC4Q9NPG8 344 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 MMP17Q9ULZ9 603 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 HPCAL4Q9UM19 191 aa19.58■□□□□ 0.72
SQSTM1-216ENST00000626660 CCDC66A2RUB6 948 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 LAMTOR5O43504 91 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 SRPRAP08240 638 aaKnown RBP19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 CD48P09326 243 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 CHRM1P11229 460 aaPredicted RBP19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 SERPINB6P35237 376 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 CXCL12P48061 93 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 NUMBP49757 651 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 NDST2P52849 883 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 NUBP1P53384 320 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 MMRN1Q13201 1228 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 PARP15Q460N3 678 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 PKN3Q6P5Z2 889 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 SERPINA13PQ6UXR4 307 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 MAMSTRQ6ZN01 415 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 SYT13Q7L8C5 426 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 VSIG1Q86XK7 387 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 KATNAL2Q8IYT4 538 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 RAPGEF5Q92565 580 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 RBM41Q96IZ5 413 aaKnown RBP19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 CACNA2D2Q9NY47 1150 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 HCN2Q9UL51 889 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 SLC8A2Q9UPR5 921 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 ERVW-1Q9UQF0 538 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 CAPN6Q9Y6Q1 641 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 STON1Q9Y6Q2 735 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 MUC6Q6W4X9 2439 aa19.57■□□□□ 0.72
SQSTM1-216ENST00000626660 ANTXRLA6NF34 631 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 ARHGAP42A6NI28 874 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 MIF4GDA9UHW6 222 aaKnown RBP19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 ZNF487B1APH4 448 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 RASA4BC9J798 803 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 CBX4O00257 560 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 DCLK1O15075 740 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 RASA4O43374 803 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 CTNNA2P26232 953 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 CTNNA1P35221 906 aaKnown RBP19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 WASP42768 502 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 CTSOP43234 321 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 ANKRD20A8PQ5CZ79 823 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 RETSATQ6NUM9 610 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 NT5DC3Q86UY8 548 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 C1orf210Q8IVY1 113 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 UBL4BQ8N7F7 174 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 KDM1BQ8NB78 822 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 UBE2Q2Q8WVN8 375 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 ARHGEF2Q92974 986 aaKnown RBP19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 RNF25Q96BH1 459 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 ACOX2Q99424 681 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 PSMB7Q99436 277 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 MAK16Q9BXY0 300 aaKnown RBP19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms