RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 AFMIDQ63HM1 303 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 SLC35F6Q8N357 371 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 NPWQ8N729 165 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 TLR10Q9BXR5 811 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 FOXQ1Q9C009 403 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 LRRC19Q9H756 370 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 MTF2Q9Y483 593 aaPredicted RBP20.22■□□□□ 0.83
UPF3A-211ENST00000618700 hCG_1818297A0A087WSY0 165 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 A0A0D9SEW6 157 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 TBC1D3BA6NDS4 549 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 TMEM221A6NGB7 291 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 K7EQS6 105 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 M0R296 226 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 CHRNB1P11230 501 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 PTPN7P35236 360 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 TNFRSF4P43489 277 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 NDST2P52849 883 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 COPS2P61201 443 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 GNA12Q03113 381 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 FZD5Q13467 585 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 TFDP3Q5H9I0 405 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 NCBP2-AS2Q69YL0 99 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 CWF19L1Q69YN2 538 aaKnown RBP20.21■□□□□ 0.83
UPF3A-211ENST00000618700 SLC9A4Q6AI14 798 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 TMCO3Q6UWJ1 677 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 ARHGAP12Q8IWW6 846 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 APCDD1Q8J025 514 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 PJA1Q8NG27 643 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 NELL2Q99435 816 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 PSMB7Q99436 277 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 FEM1AQ9BSK4 669 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 OSBPL6Q9BZF3 934 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 MAGEH1Q9H213 219 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 C11orf16Q9NQ32 467 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 STARD13Q9Y3M8 1113 aa20.21■□□□□ 0.83
UPF3A-211ENST00000618700 MUC22E2RYF6 1773 aaPredicted RBP20.21■□□□□ 0.83
UPF3A-211ENST00000618700 C2orf72A6NCS6 295 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 RAMP2O60895 175 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 PDGFBP01127 241 aaPredicted RBP20.2■□□□□ 0.82
UPF3A-211ENST00000618700 PYGMP11217 842 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 ETFBP38117 255 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 KIR2DL1P43626 348 aaPredicted RBP20.2■□□□□ 0.82
UPF3A-211ENST00000618700 YBEYP58557 167 aaPredicted RBP20.2■□□□□ 0.82
UPF3A-211ENST00000618700 UBXN2BQ14CS0 331 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 PAFAH1B3Q15102 231 aaKnown RBP20.2■□□□□ 0.82
UPF3A-211ENST00000618700 RPS6KA1Q15418 735 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 PARP15Q460N3 678 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 FBXO43Q4G163 708 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 MBLAC2Q68D91 279 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 NUDT18Q6ZVK8 323 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 CCDC105Q8IYK2 499 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 LZTR1Q8N653 840 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 PLD5Q8N7P1 536 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 DCAF4L2Q8NA75 395 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 OR7D4Q8NG98 312 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 ARHGEF2Q92974 986 aaKnown RBP20.2■□□□□ 0.82
UPF3A-211ENST00000618700 TTC17Q96AE7 1141 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 MUC3BQ9H195 1237 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 PRDM16Q9HAZ2 1276 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 ELOVL2Q9NXB9 296 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 HCN2Q9UL51 889 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 JRKLQ9Y4A0 524 aa20.2■□□□□ 0.82
UPF3A-211ENST00000618700 ANTXRLA6NF34 631 aa20.19■□□□□ 0.82
UPF3A-211ENST00000618700 FAM170BA6NMN3 283 aa20.19■□□□□ 0.82
UPF3A-211ENST00000618700 MSNP26038 577 aaKnown RBP20.19■□□□□ 0.82
UPF3A-211ENST00000618700 SERPINB6P35237 376 aa20.19■□□□□ 0.82
UPF3A-211ENST00000618700 ACVRL1P37023 503 aa20.19■□□□□ 0.82
UPF3A-211ENST00000618700 DNA2P51530 1060 aa20.19■□□□□ 0.82
UPF3A-211ENST00000618700 DGKKQ5KSL6 1271 aa20.19■□□□□ 0.82
UPF3A-211ENST00000618700 CCDC50Q8IVM0 306 aa20.19■□□□□ 0.82
UPF3A-211ENST00000618700 CELF6Q96J87 481 aaKnown RBP20.19■□□□□ 0.82
UPF3A-211ENST00000618700 ACE2Q9BYF1 805 aaPredicted RBP20.19■□□□□ 0.82
UPF3A-211ENST00000618700 RBM12Q9NTZ6 932 aaKnown RBP20.19■□□□□ 0.82
UPF3A-211ENST00000618700 VPS28Q9UK41 221 aa20.19■□□□□ 0.82
UPF3A-211ENST00000618700 EFR3BQ9Y2G0 817 aa20.19■□□□□ 0.82
UPF3A-211ENST00000618700 FAM86C2PA6NEL3 165 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 RASA4BC9J798 803 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 APOL1O14791 398 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 RASA4O43374 803 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 TIMM44O43615 452 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 MFSD11O43934 449 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 GPR37L1O60883 481 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 KRT10P13645 584 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 ZNF211Q13398 564 aaPredicted RBP20.18■□□□□ 0.82
UPF3A-211ENST00000618700 LRRC32Q14392 662 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 POLD3Q15054 466 aaPredicted RBP20.18■□□□□ 0.82
UPF3A-211ENST00000618700 TMEM31Q5JXX7 168 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 AADACL2Q6P093 401 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 RFX6Q8HWS3 928 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 SYNPOQ8N3V7 929 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 FLCNQ8NFG4 579 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 CLDN23Q96B33 292 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 HMCESQ96FZ2 354 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 HERPUD2Q9BSE4 406 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 C2orf49Q9BVC5 232 aaPredicted RBP20.18■□□□□ 0.82
UPF3A-211ENST00000618700 CIPCQ9C0C6 399 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 CARD9Q9H257 536 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 MFSD1Q9H3U5 465 aa20.18■□□□□ 0.82
UPF3A-211ENST00000618700 ENC1O14682 589 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 RNF40O75150 1001 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms