RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 PTPRN2Q92932 1015 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 TMA16Q96EY4 203 aaKnown RBP4.73□□□□□ -1.65
SNCA-213ENST00000618500 ARHGAP9Q9BRR9 750 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 NT5C1AQ9BXI3 368 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 TMPRSS4Q9NRS4 437 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 ABCC13Q9NSE7 274 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 PANK4Q9NVE7 773 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 PLEKHB1Q9UF11 243 aaPredicted RBP4.73□□□□□ -1.65
SNCA-213ENST00000618500 NAGPAQ9UK23 515 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 SPTY2D1-AS1A0A0U1RR47 76 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 TYW5A2RUC4 315 aaKnown RBP4.73□□□□□ -1.65
SNCA-213ENST00000618500 BLACEA4D250 179 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 ZNF891A8MT65 544 aaPredicted RBP4.73□□□□□ -1.65
SNCA-213ENST00000618500 D6RAR5 112 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 SCAMP3O14828 347 aaKnown RBP4.73□□□□□ -1.65
SNCA-213ENST00000618500 HGSO14964 777 aaPredicted RBP4.73□□□□□ -1.65
SNCA-213ENST00000618500 GPR37O15354 613 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 ACSL4O60488 711 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 LUC7L3O95232 432 aaKnown RBP4.73□□□□□ -1.65
SNCA-213ENST00000618500 CD70P32970 193 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 CSKP41240 450 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 POLE2P56282 527 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 YPEL5P62699 121 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 ECT2LQ008S8 904 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 KCNA1Q09470 495 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 EIF4EBP2Q13542 120 aaPredicted RBP4.73□□□□□ -1.65
SNCA-213ENST00000618500 TRA2AQ13595 282 aaKnown RBP eCLIP4.73□□□□□ -1.65
SNCA-213ENST00000618500 PTK2BQ14289 1009 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 CAPRIN2Q6IMN6 1127 aaKnown RBP4.73□□□□□ -1.65
SNCA-213ENST00000618500 ZNF438Q7Z4V0 828 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 SLC22A18ASQ8N1D0 253 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 CYB5D2Q8WUJ1 264 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 PRICKLE1Q96MT3 831 aaPredicted RBP4.73□□□□□ -1.65
SNCA-213ENST00000618500 TRIM4Q9C037 500 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 RETREG1Q9H6L5 497 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 CNGB3Q9NQW8 809 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 SRPRBQ9Y5M8 271 aaKnown RBP4.73□□□□□ -1.65
SNCA-213ENST00000618500 ZNF462Q96JM2 2506 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 LOC400499M0QZD8 3231 aa4.73□□□□□ -1.65
SNCA-213ENST00000618500 LRRIQ3A6PVS8 624 aaPredicted RBP4.72□□□□□ -1.65
SNCA-213ENST00000618500 LMO7DNF2Z398 122 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 SETSIPP0DME0 302 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 TXLNAP40222 546 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 PSMD8P48556 350 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 TAS2R38P59533 333 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 PFN3P60673 137 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 GUCY1B3Q02153 619 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 KLRB1Q12918 225 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 FZD2Q14332 565 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 MS4A13Q5J8X5 152 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 EFHC1Q5JVL4 640 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 ACOT1Q86TX2 421 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 ARL10Q8N8L6 244 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 ANKRD52Q8NB46 1076 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 TTC16Q8NEE8 873 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 PARD3BQ8TEW8 1205 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 SLC39A13Q96H72 371 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 C7orf25Q9BPX7 421 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 KBTBD4Q9NVX7 518 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 UCKL1Q9NWZ5 548 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 SPASTQ9UBP0 616 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 FBXO2Q9UK22 296 aaPredicted RBP4.72□□□□□ -1.65
SNCA-213ENST00000618500 INTS6Q9UL03 887 aaKnown RBP4.72□□□□□ -1.65
SNCA-213ENST00000618500 KIAA1257Q9ULG3 409 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 TLR6Q9Y2C9 796 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 PTPRQQ9UMZ3 2332 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 APC2O95996 2303 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 GOLGA8IPA6NC78 632 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 GOLGA8JA6NMD2 632 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 MCF2LO15068 1137 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 AQP9O43315 295 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 ZBED1O96006 694 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 IGLV3-25P01717 112 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 SUOXP51687 545 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 MC1RQ01726 317 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 EFEMP1Q12805 493 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 AGERQ15109 404 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 KMT5BQ4FZB7 885 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 FBXO39Q8N4B4 442 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 C9orf43Q8TAL5 461 aaPredicted RBP4.72□□□□□ -1.65
SNCA-213ENST00000618500 SSC4DQ8WTU2 575 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 RAB7BQ96AH8 199 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 CEP44Q9C0F1 390 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 NIF3L1Q9GZT8 377 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 IKZF4Q9H2S9 585 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 PLK2Q9NYY3 685 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 MDM4O15151 490 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 TBL1XO60907 577 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 FBXO21O94952 628 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 HOXC4P09017 264 aaPredicted RBP4.72□□□□□ -1.65
SNCA-213ENST00000618500 TNNI1P19237 187 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 VARSP26640 1264 aaKnown RBP4.72□□□□□ -1.65
SNCA-213ENST00000618500 PEX5P50542 639 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 IFRD2Q12894 506 aaPredicted RBP4.72□□□□□ -1.65
SNCA-213ENST00000618500 SPIDRQ14159 915 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 CCDC157Q569K6 752 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 RRAGBQ5VZM2 374 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 GUSBP11Q6P575 273 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 ZNF783Q6ZMS7 281 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 MACC1Q6ZN28 852 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms