RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 IPO11Q9UI26 975 aaKnown RBP15.61■□□□□ 0.09
TRIM28-209ENST00000597423 NEU2Q9Y3R4 380 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 RANBP2P49792 3224 aaKnown RBP15.6■□□□□ 0.09
TRIM28-209ENST00000597423 SCAMP3O14828 347 aaKnown RBP15.6■□□□□ 0.09
TRIM28-209ENST00000597423 OPHN1O60890 802 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 NFATC1O95644 943 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 ADH1CP00326 375 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 LAMP2P13473 410 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 TNFRSF8P28908 595 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 VIPR2P41587 438 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 IRAK1P51617 712 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 IL10RBQ08334 325 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 GPS1Q13098 491 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 SERINC3Q13530 473 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 BRD3Q15059 726 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 RNF219Q5W0B1 726 aaPredicted RBP15.6■□□□□ 0.09
TRIM28-209ENST00000597423 IL31Q6EBC2 164 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 ITPRIPL1Q6GPH6 555 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 CCNI2Q6ZMN8 369 aaPredicted RBP15.6■□□□□ 0.09
TRIM28-209ENST00000597423 ARHGEF18Q6ZSZ5 1173 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 CEP128Q6ZU80 1094 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 FIBINQ8TAL6 211 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 SEC14L1Q92503 715 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 ARHGEF2Q92974 986 aaKnown RBP15.6■□□□□ 0.09
TRIM28-209ENST00000597423 ATP2A3Q93084 1043 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 ELSPBP1Q96BH3 223 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 MYEOVQ96EZ4 313 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 HMCESQ96FZ2 354 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 ZNF599Q96NL3 588 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 PPP1R2P1Q96PQ5 205 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 CDX2Q99626 313 aaPredicted RBP15.6■□□□□ 0.09
TRIM28-209ENST00000597423 TRIM51Q9BSJ1 452 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 BBS2Q9BXC9 721 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 SLC2A11Q9BYW1 496 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 TRIM31Q9BZY9 425 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 TSPYL1Q9H0U9 437 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 MUC3BQ9H195 1237 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 SP110Q9HB58 689 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 NDFIP2Q9NV92 336 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 SEPT10Q9P0V9 454 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 ANAPC5Q9UJX4 755 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 RAB21Q9UL25 225 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 SNX24Q9Y343 169 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 ANAPC1Q9H1A4 1944 aa15.6■□□□□ 0.09
TRIM28-209ENST00000597423 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 A0A0A0MRY4 1105 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 ZSCAN5CA6NGD5 496 aaPredicted RBP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 RNF103O00237 685 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 KDELR3O43731 214 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 MAFKO60675 156 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 CCNB1P14635 433 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 FOSL2P15408 326 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 RPL22P35268 128 aaKnown RBP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 GEMIN4P57678 1058 aaKnown RBP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 GAD2Q05329 585 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 HNRNPDQ14103 355 aaKnown RBP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 HLTFQ14527 1009 aaKnown RBP eCLIP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 PRPSAP1Q14558 356 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 NAA30Q147X3 362 aaPredicted RBP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 TRIP13Q15645 432 aaPredicted RBP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 PID1Q7Z2X4 250 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 TMEM25Q86YD3 366 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 MFSD6LQ8IWD5 586 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 CCDC33Q8N5R6 958 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 DEPDC1BQ8WUY9 529 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 SPATA13Q96N96 652 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 XPO6Q96QU8 1125 aaKnown RBP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 MYADMQ96S97 322 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 EPC1Q9H2F5 836 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 DPH5Q9H2P9 285 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 LINC00597Q9H2U6 94 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 NOL6Q9H6R4 1146 aaKnown RBP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 C10orf88Q9H8K7 445 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 ATP13A1Q9HD20 1204 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 MARK1Q9P0L2 795 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 KLHL8Q9P2G9 620 aaPredicted RBP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 MTRF1LQ9UGC7 380 aaKnown RBP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 TPX2Q9ULW0 747 aaKnown RBP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 USP15Q9Y4E8 981 aaPredicted RBP15.59■□□□□ 0.09
TRIM28-209ENST00000597423 WNT6Q9Y6F9 365 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 MYO9BQ13459 2157 aa15.59■□□□□ 0.09
TRIM28-209ENST00000597423 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-209ENST00000597423 GOLGA6CA6NDK9 693 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 GOLGA6BA6NDN3 693 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 DYNC1I1O14576 645 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 ECI2O75521 394 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 PENKP01210 267 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-209ENST00000597423 JCHAINP01591 159 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 ZSCAN5DPP0CG00 497 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 GOLGA6DP0CG33 693 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 FDFT1P37268 417 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 VPS41P49754 854 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 SGSHP51688 502 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 CLCN6P51797 869 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 IFI35P80217 286 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-209ENST00000597423 SMAD4Q13485 552 aaKnown RBP15.58■□□□□ 0.08
TRIM28-209ENST00000597423 RFTN1Q14699 578 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-209ENST00000597423 PARP6Q2NL67 630 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 TEX44Q53QW1 395 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 ANKRD20A2Q5SQ80 823 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms