RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 CXCR5P32302 372 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 ARL4AP40617 200 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 PEX5P50542 639 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 ZNF135P52742 658 aaPredicted RBP12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 COPS2P61201 443 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 ZNF211Q13398 564 aaPredicted RBP12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 CCINQ13939 588 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 DPYSL2Q16555 572 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 ATP13A4Q4VNC1 1196 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 FAM78AQ5JUQ0 283 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 DGKKQ5KSL6 1271 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 VITQ6UXI7 678 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 CHSY1Q86X52 802 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 ZSCAN18Q8TBC5 510 aaPredicted RBP12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 RNF25Q96BH1 459 aaPredicted RBP12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 ZFRQ96KR1 1074 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 ASB16Q96NS5 453 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 DDX50Q9BQ39 737 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 SIK2Q9H0K1 926 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 ZFP14Q9HCL3 533 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 GKN1Q9NS71 199 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 TDP1Q9NUW8 608 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 CFAP97Q9P2B7 532 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 ZNF510Q9Y2H8 683 aa12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 NUP210Q8TEM1 1887 aaPredicted RBP12.42□□□□□ -0.42
SHKBP1-213ENST00000597325 SHROOM3Q8TF72 1996 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 H0Y626 953 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 TK2O00142 265 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 LEFTY2O00292 366 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 EEF2KO00418 725 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 CES2O00748 559 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 FANCGO15287 622 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 CREB3O43889 395 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 TRIM16O95361 564 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 PSMC3P17980 439 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 HTR7P34969 479 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 TPI1P60174 286 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 TUBB2AQ13885 445 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 CA9Q16790 459 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 TFDP3Q5H9I0 405 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 DCAF12L1Q5VU92 463 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 C1orf228Q6PIY5 440 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 TXNDC11Q6PKC3 985 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 LRRC31Q6UY01 552 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 SPOCD1Q6ZMY3 1216 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 RAB44Q7Z6P3 723 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 VSIG1Q86XK7 387 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 DENND1CQ8IV53 801 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 CHCHD4Q8N4Q1 142 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 SH3RF2Q8TEC5 729 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 RAPGEF5Q92565 580 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 USP13Q92995 863 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 MSANTD3Q96H12 275 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 KCTD15Q96SI1 283 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 NAP1L3Q99457 506 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 ZNF670Q9BS34 389 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 TUBB2BQ9BVA1 445 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 MAK16Q9BXY0 300 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 SMG9Q9H0W8 520 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 OSBPL2Q9H1P3 480 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 PCDH18Q9HCL0 1135 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 TMPRSS4Q9NRS4 437 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 RCOR3Q9P2K3 495 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 OR12D3Q9UGF7 316 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 URB1O60287 2271 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 PLXNB3Q9ULL4 1909 aa12.41□□□□□ -0.42
SHKBP1-213ENST00000597325 SPAARA0A1B0GVQ0 90 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 E2F8A0AVK6 867 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 TYW5A2RUC4 315 aaKnown RBP12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 ZNF487B1APH4 448 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 F5H5T6 163 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 PGRMC1O00264 195 aaKnown RBP12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 DAPK3O43293 454 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 ACSL4O60488 711 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 SRGAP2O75044 1071 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 PRAMEF12O95522 483 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 PYGMP11217 842 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 KDELR1P24390 212 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 WEE1P30291 646 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 L1CAMP32004 1257 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 PTPN7P35236 360 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 CDKN2BP42772 138 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 PAFAH1B1P43034 410 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 AMPD2Q01433 879 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 CREB5Q02930 508 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 USP4Q13107 963 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 DPYSL3Q14195 570 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 PPP2R5EQ16537 467 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 MS4A13Q5J8X5 152 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 PIK3R6Q5UE93 754 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 RAP1GAP2Q684P5 730 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 PKN3Q6P5Z2 889 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 MFSD7Q6UXD7 560 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 PIP4P1Q86T03 277 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 RFX6Q8HWS3 928 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 ARID3BQ8IVW6 561 aaPredicted RBP12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 PYROXD2Q8N2H3 581 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 COG1Q8WTW3 980 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 SMARCD2Q92925 531 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms