RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 OSBPL2Q9H1P3 480 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 KLHL11Q9NVR0 708 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 TMEM51Q9NW97 253 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 SMPD4Q9NXE4 827 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 DDX56Q9NY93 547 aaKnown RBP9.75□□□□□ -0.85
TRIM28-208ENST00000597172 MRPS23Q9Y3D9 190 aaKnown RBP9.75□□□□□ -0.85
TRIM28-208ENST00000597172 SNX10Q9Y5X0 201 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 CPQQ9Y646 472 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 SAR1BQ9Y6B6 198 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 ATG2BQ96BY7 2078 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 ANAPC1Q9H1A4 1944 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 CCDC163A0A0D9SF12 145 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 PAGE1O75459 146 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 ZRANB2O95218 330 aaKnown RBP eCLIP9.74□□□□□ -0.85
TRIM28-208ENST00000597172 SLC2A3P11169 496 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 DESP17661 470 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 WEE1P30291 646 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 PXNP49023 591 aaPredicted RBP9.74□□□□□ -0.85
TRIM28-208ENST00000597172 KPNA1P52294 538 aaPredicted RBP9.74□□□□□ -0.85
TRIM28-208ENST00000597172 AIF1P55008 147 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 MLLT6P55198 1093 aaPredicted RBP9.74□□□□□ -0.85
TRIM28-208ENST00000597172 SEMA3BQ13214 749 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 GRM2Q14416 872 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 ELF2Q15723 593 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 DPYSL2Q16555 572 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 TAZQ16635 292 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 ZNF423Q2M1K9 1284 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 ARHGAP15Q53QZ3 475 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 C14orf80Q86SX3 495 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 PSTKQ8IV42 348 aaKnown RBP9.74□□□□□ -0.85
TRIM28-208ENST00000597172 KCTD6Q8NC69 237 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 EXD1Q8NHP7 514 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 KIF18AQ8NI77 898 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 RIN3Q8TB24 985 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 TSC1Q92574 1164 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 IRF7Q92985 503 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 USP13Q92995 863 aaPredicted RBP9.74□□□□□ -0.85
TRIM28-208ENST00000597172 ELSPBP1Q96BH3 223 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 PLD4Q96BZ4 506 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 MS4A14Q96JA4 679 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 PBKQ96KB5 322 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 LRRC3BQ96PB8 259 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 HAPLN3Q96S86 360 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 HERPUD2Q9BSE4 406 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 TRMT61BQ9BVS5 477 aaKnown RBP9.74□□□□□ -0.85
TRIM28-208ENST00000597172 NACA2Q9H009 215 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 SMG9Q9H0W8 520 aaKnown RBP9.74□□□□□ -0.85
TRIM28-208ENST00000597172 DUSP15Q9H1R2 295 aaPredicted RBP9.74□□□□□ -0.85
TRIM28-208ENST00000597172 PCDH18Q9HCL0 1135 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.74□□□□□ -0.85
TRIM28-208ENST00000597172 ARHGAP26Q9UNA1 814 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 AP4E1Q9UPM8 1137 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 CCL26Q9Y258 94 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.74□□□□□ -0.85
TRIM28-208ENST00000597172 HS3ST4Q9Y661 456 aa9.74□□□□□ -0.85
TRIM28-208ENST00000597172 GOLGA6L7A0A1B0GV03 622 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 CAPN8A6NHC0 703 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 LEFTY2O00292 366 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 PDE2AO00408 941 aaPredicted RBP9.73□□□□□ -0.85
TRIM28-208ENST00000597172 CES2O00748 559 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 URI1O94763 535 aaPredicted RBP9.73□□□□□ -0.85
TRIM28-208ENST00000597172 RHOBTB1O94844 696 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 MOCS2O96007 188 aaPredicted RBP9.73□□□□□ -0.85
TRIM28-208ENST00000597172 KRT1P04264 644 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 CKMP06732 381 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 TCP1P17987 556 aaKnown RBP9.73□□□□□ -0.85
TRIM28-208ENST00000597172 CDKN2BP42772 138 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 CDH6P55285 790 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 ADCY2Q08462 1091 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 MMRN1Q13201 1228 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 DPYSL3Q14195 570 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 LLGL1Q15334 1064 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 ARL13BQ3SXY8 428 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 MS4A13Q5J8X5 152 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 DGKKQ5KSL6 1271 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 PIK3R6Q5UE93 754 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 NUGGCQ68CJ6 796 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 NADSYN1Q6IA69 706 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 CCNI2Q6ZMN8 369 aaPredicted RBP9.73□□□□□ -0.85
TRIM28-208ENST00000597172 SPOCD1Q6ZMY3 1216 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 Q6ZNB5 142 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 HTR3DQ70Z44 454 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 CREG2Q8IUH2 290 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 ARID3BQ8IVW6 561 aaPredicted RBP9.73□□□□□ -0.85
TRIM28-208ENST00000597172 UNC45BQ8IWX7 931 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 ZNF683Q8IZ20 524 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 RASGEF1CQ8N431 466 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 AZIN2Q96A70 460 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 RSPRY1Q96DX4 576 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 MYEOVQ96EZ4 313 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 BTN2A3PQ96KV6 586 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 C1orf74Q96LT6 269 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 PRMT1Q99873 361 aaKnown RBP9.73□□□□□ -0.85
TRIM28-208ENST00000597172 SIK2Q9H0K1 926 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 CARD9Q9H257 536 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 DHX35Q9H5Z1 703 aaKnown RBP9.73□□□□□ -0.85
TRIM28-208ENST00000597172 TRPV5Q9NQA5 729 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 GDE1Q9NZC3 331 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 CWC15Q9P013 229 aaKnown RBP9.73□□□□□ -0.85
TRIM28-208ENST00000597172 OR12D3Q9UGF7 316 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms