RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PBX1P40424 430 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 CTSKP43235 329 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 PSMD8P48556 350 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 METAP1P53582 386 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 CDR2Q01850 454 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 FIGNQ5HY92 759 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 USP30Q70CQ3 517 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 TMPRSS7Q7RTY8 843 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 ADAT2Q7Z6V5 191 aaKnown RBP12.88□□□□□ -0.35
UPF1-203ENST00000594504 CHSY1Q86X52 802 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 GATAD2AQ86YP4 633 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 CCDC117Q8IWD4 279 aaPredicted RBP12.88□□□□□ -0.35
UPF1-203ENST00000594504 BAP1Q92560 729 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 IQCDQ96DY2 449 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 CPXM1Q96SM3 734 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 OMDQ99983 421 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 TRIM62Q9BVG3 475 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 EDEM3Q9BZQ6 932 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 TTYH3Q9C0H2 523 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 CCDC86Q9H6F5 360 aaKnown RBP12.88□□□□□ -0.35
UPF1-203ENST00000594504 CBX4O00257 560 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 CBFA2T2O43439 604 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 RNASEH1O60930 286 aaKnown RBP12.87□□□□□ -0.35
UPF1-203ENST00000594504 GRAP2O75791 330 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 MOCS3O95396 460 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 APOEP02649 317 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 SRPRAP08240 638 aaKnown RBP12.87□□□□□ -0.35
UPF1-203ENST00000594504 MMEP08473 750 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 PDGFRAP16234 1089 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 FERP16591 822 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 YWHAZP63104 245 aaKnown RBP12.87□□□□□ -0.35
UPF1-203ENST00000594504 ECT2LQ008S8 904 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 NNTQ13423 1086 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 EIF4EBP2Q13542 120 aaPredicted RBP12.87□□□□□ -0.35
UPF1-203ENST00000594504 COL9A2Q14055 689 aaPredicted RBP12.87□□□□□ -0.35
UPF1-203ENST00000594504 TRIM72Q6ZMU5 477 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 BEND5Q7L4P6 421 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 DEFB106AQ8N104 65 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 AADATQ8N5Z0 425 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 ZNF557Q8N988 423 aaPredicted RBP12.87□□□□□ -0.35
UPF1-203ENST00000594504 MSANTD4Q8NCY6 345 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 SLC20A1Q8WUM9 679 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 IGSF8Q969P0 613 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 CDC6Q99741 560 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 SYNCQ9H7C4 482 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 POPDC2Q9HBU9 364 aa12.87□□□□□ -0.35
UPF1-203ENST00000594504 EDDM13A0A1B0GTR0 161 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 A0A1W2PQJ5 194 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 TARSL2A2RTX5 802 aaKnown RBP12.86□□□□□ -0.35
UPF1-203ENST00000594504 LRRC53A6NM62 1247 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 KCNU1A8MYU2 1149 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 VILLO15195 856 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 TNFSF14O43557 240 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 DKK1O94907 266 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 IGLV3-25P01717 112 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 ERBB2P04626 1255 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 GLI1P08151 1106 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 CHRNB2P17787 502 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 CCT8P50990 548 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 IRAK1P51617 712 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 CLDN6P56747 220 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 C21orf59P57076 290 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 RACK1P63244 317 aaKnown RBP12.86□□□□□ -0.35
UPF1-203ENST00000594504 NOMO3P69849 1222 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 FMO1Q01740 532 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 SHBQ15464 509 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 PTPN20Q4JDL3 420 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 EFHC1Q5JVL4 640 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.86□□□□□ -0.35
UPF1-203ENST00000594504 ZDHHC17Q8IUH5 632 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 CCAR2Q8N163 923 aaKnown RBP12.86□□□□□ -0.35
UPF1-203ENST00000594504 ATP6V0D2Q8N8Y2 350 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 OR52K2Q8NGK3 314 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 OR14C36Q8NHC7 312 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 HNRNPLLQ8WVV9 542 aaKnown RBP12.86□□□□□ -0.35
UPF1-203ENST00000594504 BTN2A3PQ96KV6 586 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 PRMT1Q99873 361 aaKnown RBP12.86□□□□□ -0.35
UPF1-203ENST00000594504 ACE2Q9BYF1 805 aaPredicted RBP12.86□□□□□ -0.35
UPF1-203ENST00000594504 XPO4Q9C0E2 1151 aaKnown RBP12.86□□□□□ -0.35
UPF1-203ENST00000594504 AASDHPPTQ9NRN7 309 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 ASNSD1Q9NWL6 643 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 SCML1Q9UN30 329 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 GPSM3Q9Y4H4 160 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 FRYQ5TBA9 3013 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 CHD8Q9HCK8 2581 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 NYNRINQ9P2P1 1898 aaKnown RBP12.86□□□□□ -0.35
UPF1-203ENST00000594504 ITIH6Q6UXX5 1313 aa12.86□□□□□ -0.35
UPF1-203ENST00000594504 DOCK9Q9BZ29 2069 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 TBC1D3DA0A087WVF3 549 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 TBC1D3IA0A087WXS9 549 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 TBC1D3EA0A087X179 549 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 TBC1D3KA0A087X1G2 549 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 A0A1B0GTQ1 180 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 A0A1W2PR77 199 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 FAM170AA1A519 330 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 TBC1D3FA6NER0 549 aaPredicted RBP12.85□□□□□ -0.35
UPF1-203ENST00000594504 TRABD2BA6NFA1 517 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 LRRC72A6NJI9 287 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 TBC1D3LB9A6J9 549 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 F5H5T6 163 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms