RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 EPHB2P29323 1055 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 MIPP30301 263 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 P2RY2P41231 377 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 CTSOP43234 321 aaPredicted RBP12.21□□□□□ -0.45
LIG3-213ENST00000590630 KRT83P78385 493 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 SEMA3BQ13214 749 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 HNRNPA1L2Q32P51 320 aaKnown RBP12.21□□□□□ -0.45
LIG3-213ENST00000590630 ERMARDQ5T6L9 678 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 LAIR1Q6GTX8 287 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 METTL3Q86U44 580 aaKnown RBP12.21□□□□□ -0.45
LIG3-213ENST00000590630 NLRP14Q86W24 1093 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 PYROXD2Q8N2H3 581 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 DCAF4L2Q8NA75 395 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 OR2T3Q8NH03 318 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 ZNF564Q8TBZ8 553 aaPredicted RBP12.21□□□□□ -0.45
LIG3-213ENST00000590630 ARHGEF26Q96DR7 871 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 ZC3H10Q96K80 434 aaKnown RBP12.21□□□□□ -0.45
LIG3-213ENST00000590630 RPL10LQ96L21 214 aaKnown RBP12.21□□□□□ -0.45
LIG3-213ENST00000590630 MKRN2Q9H000 416 aaKnown RBP12.21□□□□□ -0.45
LIG3-213ENST00000590630 PRDM16Q9HAZ2 1276 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 SPTLC3Q9NUV7 552 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 TMEM248Q9NWD8 314 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 DONSONQ9NYP3 566 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 CTTNBP2NLQ9P2B4 639 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 PCSK1NQ9UHG2 260 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 SLC25A13Q9UJS0 675 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 USP18Q9UMW8 372 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 AP4E1Q9UPM8 1137 aa12.21□□□□□ -0.45
LIG3-213ENST00000590630 EDDM13A0A1B0GTR0 161 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 CXorf51AA0A1B0GTR3 108 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 FGF10O15520 208 aaPredicted RBP12.2□□□□□ -0.46
LIG3-213ENST00000590630 CREB3O43889 395 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 CDC25BP30305 580 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 ZNF135P52742 658 aaPredicted RBP12.2□□□□□ -0.46
LIG3-213ENST00000590630 COPAP53621 1224 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 GNA12Q03113 381 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 ELF2Q15723 593 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 CYP4V2Q6ZWL3 525 aaPredicted RBP12.2□□□□□ -0.46
LIG3-213ENST00000590630 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.2□□□□□ -0.46
LIG3-213ENST00000590630 TMPRSS6Q8IU80 811 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 CCDC170Q8IYT3 715 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 ZNF366Q8N895 744 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 RTL3Q8N8U3 475 aaKnown RBP12.2□□□□□ -0.46
LIG3-213ENST00000590630 RUBCNQ92622 972 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 PRCCQ92733 491 aaPredicted RBP12.2□□□□□ -0.46
LIG3-213ENST00000590630 ERLEC1Q96DZ1 483 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 PEBP4Q96S96 227 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 SNRNP25Q9BV90 132 aaKnown RBP12.2□□□□□ -0.46
LIG3-213ENST00000590630 PACSIN1Q9BY11 444 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 MAGEB5Q9BZ81 275 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 CATSPERBQ9H7T0 1116 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 PRSS16Q9NQE7 514 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 VPS51Q9UID3 782 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 SLCO3A1Q9UIG8 710 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 INTUQ9ULD6 942 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 HS3ST2Q9Y278 367 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 GON4LQ3T8J9 2241 aa12.2□□□□□ -0.46
LIG3-213ENST00000590630 TNRC6BQ9UPQ9 1833 aaKnown RBP12.19□□□□□ -0.46
LIG3-213ENST00000590630 A0A0D9SEW6 157 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 TARSL2A2RTX5 802 aaKnown RBP12.19□□□□□ -0.46
LIG3-213ENST00000590630 TTC34A8MYJ7 566 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 ATP9BO43861 1147 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 RAMP2O60895 175 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 RHOBTB1O94844 696 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 FECHP22830 423 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 HOXD11P31277 338 aaPredicted RBP12.19□□□□□ -0.46
LIG3-213ENST00000590630 NUMBP49757 651 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 STK19P49842 368 aaPredicted RBP12.19□□□□□ -0.46
LIG3-213ENST00000590630 TPI1P60174 286 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 ZBTB16Q05516 673 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 MAP7D1Q3KQU3 841 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 PLK5Q496M5 336 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 BOLA3Q53S33 107 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 C9orf64Q5T6V5 341 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 KIAA1324Q6UXG2 1013 aaKnown RBP12.19□□□□□ -0.46
LIG3-213ENST00000590630 ALYREFQ86V81 257 aaKnown RBP12.19□□□□□ -0.46
LIG3-213ENST00000590630 KBTBD6Q86V97 674 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 RHOT2Q8IXI1 618 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 SH2D3CQ8N5H7 860 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 FAM160A2Q8N612 972 aaPredicted RBP12.19□□□□□ -0.46
LIG3-213ENST00000590630 TEKT4Q8WW24 435 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 RLN3Q8WXF3 142 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 SIPA1Q96FS4 1042 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 LOXL4Q96JB6 756 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 BTBD6Q96KE9 485 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 PSMB7Q99436 277 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 SLC6A17Q9H1V8 727 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 RSPH9Q9H1X1 276 aaPredicted RBP12.19□□□□□ -0.46
LIG3-213ENST00000590630 MAGEH1Q9H213 219 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 DHX35Q9H5Z1 703 aaKnown RBP12.19□□□□□ -0.46
LIG3-213ENST00000590630 ATP13A1Q9HD20 1204 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 USP36Q9P275 1121 aaKnown RBP12.19□□□□□ -0.46
LIG3-213ENST00000590630 IMPACTQ9P2X3 320 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 NCDNQ9UBB6 729 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 DNAI1Q9UI46 699 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 GMEB2Q9UKD1 530 aa12.19□□□□□ -0.46
LIG3-213ENST00000590630 WASH4PA8MWX3 477 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 CBX4O00257 560 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 DCLK1O15075 740 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 MAP3K13O43283 966 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms