RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 MAPKAPK2P49137 400 aa25.71■■□□□ 1.71
SHMT1-207ENST00000580002 NDST2P52849 883 aa25.71■■□□□ 1.71
SHMT1-207ENST00000580002 TUBB4BP68371 445 aa25.71■■□□□ 1.71
SHMT1-207ENST00000580002 ZNF177Q13360 481 aaPredicted RBP25.71■■□□□ 1.71
SHMT1-207ENST00000580002 POLD3Q15054 466 aaPredicted RBP25.71■■□□□ 1.71
SHMT1-207ENST00000580002 CCDC70Q6NSX1 233 aa25.71■■□□□ 1.71
SHMT1-207ENST00000580002 USP33Q8TEY7 942 aa25.71■■□□□ 1.71
SHMT1-207ENST00000580002 RIPOR3Q96MK2 946 aa25.71■■□□□ 1.71
SHMT1-207ENST00000580002 FEZ2Q9UHY8 353 aaPredicted RBP25.71■■□□□ 1.71
SHMT1-207ENST00000580002 UTP11Q9Y3A2 253 aaKnown RBP25.71■■□□□ 1.71
SHMT1-207ENST00000580002 TP73O15350 636 aa25.7■■□□□ 1.7
SHMT1-207ENST00000580002 KCNA5P22460 613 aa25.7■■□□□ 1.7
SHMT1-207ENST00000580002 STIP1P31948 543 aaKnown RBP25.7■■□□□ 1.7
SHMT1-207ENST00000580002 LMNB2Q03252 620 aa25.7■■□□□ 1.7
SHMT1-207ENST00000580002 ZBTB17Q13105 803 aa25.7■■□□□ 1.7
SHMT1-207ENST00000580002 LY6G5CQ5SRR4 150 aa25.7■■□□□ 1.7
SHMT1-207ENST00000580002 HEATR6Q6AI08 1181 aaKnown RBP25.7■■□□□ 1.7
SHMT1-207ENST00000580002 RHBDF2Q6PJF5 856 aa25.7■■□□□ 1.7
SHMT1-207ENST00000580002 PARM1Q6UWI2 310 aa25.7■■□□□ 1.7
SHMT1-207ENST00000580002 CHST9Q7L1S5 443 aa25.7■■□□□ 1.7
SHMT1-207ENST00000580002 ARHGEF2Q92974 986 aaKnown RBP25.7■■□□□ 1.7
SHMT1-207ENST00000580002 GRHL1Q9NZI5 618 aa25.7■■□□□ 1.7
SHMT1-207ENST00000580002 IPO11Q9UI26 975 aaKnown RBP25.7■■□□□ 1.7
SHMT1-207ENST00000580002 CD207Q9UJ71 328 aa25.7■■□□□ 1.7
SHMT1-207ENST00000580002 TBC1D30Q9Y2I9 924 aa25.7■■□□□ 1.7
SHMT1-207ENST00000580002 RAD54BQ9Y620 910 aa25.7■■□□□ 1.7
SHMT1-207ENST00000580002 H0Y626 953 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 LAMP2P13473 410 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 ARSAP15289 507 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 MX2P20592 715 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 GNA12Q03113 381 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 GPS1Q13098 491 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 MPPE1Q53F39 396 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 SYCP2LQ5T4T6 812 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 RNF219Q5W0B1 726 aaPredicted RBP25.69■■□□□ 1.7
SHMT1-207ENST00000580002 VITQ6UXI7 678 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 ZNF354CQ86Y25 554 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 CCDC13Q8IYE1 715 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 ATPAF2Q8N5M1 289 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 CCDC89Q8N998 374 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 BPIFB1Q8TDL5 484 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 SEC14L1Q92503 715 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 FGF14Q92915 247 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 RTP4Q96DX8 246 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 KXD1Q9BQD3 176 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 SHROOM3Q8TF72 1996 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 NUP210Q8TEM1 1887 aaPredicted RBP25.69■■□□□ 1.7
SHMT1-207ENST00000580002 LUC7L3O95232 432 aaKnown RBP25.69■■□□□ 1.7
SHMT1-207ENST00000580002 RHOCP08134 193 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 ADCY8P40145 1251 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 MTHFRP42898 656 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 CLCN6P51797 869 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 FAXCQ5TGI0 409 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 ASTLQ6HA08 431 aaPredicted RBP25.69■■□□□ 1.7
SHMT1-207ENST00000580002 SUSD6Q92537 303 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 IRF7Q92985 503 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 SPON2Q9BUD6 331 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 TRPV4Q9HBA0 871 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 PCDH9Q9HC56 1237 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 SPHK2Q9NRA0 654 aa25.69■■□□□ 1.7
SHMT1-207ENST00000580002 DUS2Q9NX74 493 aaKnown RBP25.69■■□□□ 1.7
SHMT1-207ENST00000580002 OTOL1A6NHN0 477 aaPredicted RBP25.68■■□□□ 1.7
SHMT1-207ENST00000580002 NEDD8-MDP1E9PL57 170 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 RNF103O00237 685 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 TRIM24O15164 1050 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 NCAM2O15394 837 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 PEX11BO96011 259 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 PTPN3P26045 913 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 ECHS1P30084 290 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 TNK2Q07912 1038 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 SERINC3Q13530 473 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 GRM2Q14416 872 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 SKIV2LQ15477 1246 aaKnown RBP25.68■■□□□ 1.7
SHMT1-207ENST00000580002 P3H1Q32P28 736 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 CCNI2Q6ZMN8 369 aaPredicted RBP25.68■■□□□ 1.7
SHMT1-207ENST00000580002 ZNF567Q8N184 647 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 DEFB123Q8N688 67 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 TSGA13Q96PP4 275 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 KIF9Q9HAQ2 790 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 RAB21Q9UL25 225 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 NFU1Q9UMS0 254 aa25.68■■□□□ 1.7
SHMT1-207ENST00000580002 METTL18O95568 372 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 JCHAINP01591 159 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 ANO4Q32M45 955 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 EML3Q32P44 896 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 ZDHHC24Q6UX98 284 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 SYDE1Q6ZW31 735 aaPredicted RBP25.67■■□□□ 1.7
SHMT1-207ENST00000580002 RAB17Q9H0T7 212 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 ZFP14Q9HCL3 533 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 TBC1D14Q9P2M4 693 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 ARHGAP42A6NI28 874 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 CCNCP24863 283 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 CSKP41240 450 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 ANKRD20A2Q5SQ80 823 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 ANKRD20A1Q5TYW2 823 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 TTC39BQ5VTQ0 682 aaPredicted RBP25.67■■□□□ 1.7
SHMT1-207ENST00000580002 ANKRD20A3Q5VUR7 823 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 WDR93Q6P2C0 686 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 MFN1Q8IWA4 741 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 IFT20Q8IY31 132 aa25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms