RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 SLCO3A1Q9UIG8 710 aa20.01■□□□□ 0.79
SS18-209ENST00000578595 MBD1Q9UIS9 605 aaPredicted RBP20.01■□□□□ 0.79
SS18-209ENST00000578595 TBC1D30Q9Y2I9 924 aa20.01■□□□□ 0.79
SS18-209ENST00000578595 ADAMTS9Q9P2N4 1935 aa20.01■□□□□ 0.79
SS18-209ENST00000578595 ATXN2Q99700 1313 aaKnown RBP20.01■□□□□ 0.79
SS18-209ENST00000578595 EDDM13A0A1B0GTR0 161 aa20■□□□□ 0.79
SS18-209ENST00000578595 MFAP3LO75121 409 aa20■□□□□ 0.79
SS18-209ENST00000578595 ADKP55263 362 aaKnown RBP20■□□□□ 0.79
SS18-209ENST00000578595 HNRNPA1L2Q32P51 320 aaKnown RBP20■□□□□ 0.79
SS18-209ENST00000578595 ZNF776Q68DI1 518 aaPredicted RBP20■□□□□ 0.79
SS18-209ENST00000578595 C12orf50Q8NA57 414 aaPredicted RBP20■□□□□ 0.79
SS18-209ENST00000578595 OR7D4Q8NG98 312 aa20■□□□□ 0.79
SS18-209ENST00000578595 PIGKQ92643 395 aa20■□□□□ 0.79
SS18-209ENST00000578595 MYO19Q96H55 970 aa20■□□□□ 0.79
SS18-209ENST00000578595 EPAS1Q99814 870 aa20■□□□□ 0.79
SS18-209ENST00000578595 MAGEB5Q9BZ81 275 aa20■□□□□ 0.79
SS18-209ENST00000578595 TRIM7Q9C029 511 aa20■□□□□ 0.79
SS18-209ENST00000578595 THAP2Q9H0W7 228 aa20■□□□□ 0.79
SS18-209ENST00000578595 OSBPL2Q9H1P3 480 aa20■□□□□ 0.79
SS18-209ENST00000578595 SMOC1Q9H4F8 434 aa20■□□□□ 0.79
SS18-209ENST00000578595 PARD6AQ9NPB6 346 aa20■□□□□ 0.79
SS18-209ENST00000578595 SEMA4GQ9NTN9 838 aa20■□□□□ 0.79
SS18-209ENST00000578595 ABHD10Q9NUJ1 306 aa20■□□□□ 0.79
SS18-209ENST00000578595 GPATCH2LQ9NWQ4 482 aa20■□□□□ 0.79
SS18-209ENST00000578595 DNAI1Q9UI46 699 aa20■□□□□ 0.79
SS18-209ENST00000578595 FRYLO94915 3013 aa20■□□□□ 0.79
SS18-209ENST00000578595 FAM72CH0Y354 149 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 CBX4O00257 560 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 AKR1B10O60218 316 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 SNAP91O60641 907 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 LRIG2O94898 1065 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 TPMTP51580 245 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 PLK1P53350 603 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 GFPT1Q06210 699 aaPredicted RBP19.99■□□□□ 0.79
SS18-209ENST00000578595 FAM72AQ5TYM5 149 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 LYSMD4Q5XG99 296 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 IL31Q6EBC2 164 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 FAM72DQ6L9T8 149 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 FAM72BQ86X60 149 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 RBSNQ9H1K0 784 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 ATP13A1Q9HD20 1204 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 PPARGC1AQ9UBK2 798 aaKnown RBP19.99■□□□□ 0.79
SS18-209ENST00000578595 VPS51Q9UID3 782 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 FZD10Q9ULW2 581 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 AP4E1Q9UPM8 1137 aa19.99■□□□□ 0.79
SS18-209ENST00000578595 A0A0D9SEW6 157 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 TMEM191CA6NGB0 347 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 MEI4A8MW99 385 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 PRPSAP2O60256 369 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 LRP3O75074 770 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 RHOQP17081 205 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 EPHB2P29323 1055 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 CD6P30203 668 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 PTGER3P43115 390 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 PSMD8P48556 350 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 TPI1P60174 286 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 NRG1Q02297 640 aaPredicted RBP19.98■□□□□ 0.79
SS18-209ENST00000578595 SCAPQ12770 1279 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 AASDHQ4L235 1098 aaPredicted RBP19.98■□□□□ 0.79
SS18-209ENST00000578595 SARM1Q6SZW1 724 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 CNGA4Q8IV77 575 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 MMAAQ8IVH4 418 aaKnown RBP19.98■□□□□ 0.79
SS18-209ENST00000578595 DCAF4L2Q8NA75 395 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 ATP11CQ8NB49 1132 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 KDM1BQ8NB78 822 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 ALG14Q96F25 216 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 TOE1Q96GM8 510 aaKnown RBP19.98■□□□□ 0.79
SS18-209ENST00000578595 HSPA12BQ96MM6 686 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 DNAJC7Q99615 494 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 NUP85Q9BW27 656 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 GPR174Q9BXC1 333 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 DHX35Q9H5Z1 703 aaKnown RBP19.98■□□□□ 0.79
SS18-209ENST00000578595 ANAPC7Q9UJX3 599 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 PCDHGA5Q9Y5G8 931 aa19.98■□□□□ 0.79
SS18-209ENST00000578595 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.98■□□□□ 0.79
SS18-209ENST00000578595 SHROOM3Q8TF72 1996 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 ILVBLA1L0T0 632 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 TARSL2A2RTX5 802 aaKnown RBP19.97■□□□□ 0.79
SS18-209ENST00000578595 AKR1B15C9JRZ8 316 aaPredicted RBP19.97■□□□□ 0.79
SS18-209ENST00000578595 VAV1P15498 845 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 SSR1P43307 286 aaKnown RBP19.97■□□□□ 0.79
SS18-209ENST00000578595 AIF1P55008 147 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 RPS14P62263 151 aaKnown RBP19.97■□□□□ 0.79
SS18-209ENST00000578595 GNA12Q03113 381 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 ZNF252P-AS1Q0IIN9 211 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 SF3A2Q15428 464 aaKnown RBP19.97■□□□□ 0.79
SS18-209ENST00000578595 MANEALQ5VSG8 457 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 LINGO4Q6UY18 593 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 PRR23CQ6ZRP0 262 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 RGL4Q8IZJ4 473 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 STK40Q8N2I9 435 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 CTNNBL1Q8WYA6 563 aaPredicted RBP19.97■□□□□ 0.79
SS18-209ENST00000578595 SNX19Q92543 992 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 PSMB7Q99436 277 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 ITM2CQ9NQX7 267 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 USP36Q9P275 1121 aaKnown RBP19.97■□□□□ 0.79
SS18-209ENST00000578595 OR51B4Q9Y5P0 310 aa19.97■□□□□ 0.79
SS18-209ENST00000578595 TP53BP1Q12888 1972 aaPredicted RBP19.96■□□□□ 0.79
SS18-209ENST00000578595 BCLAF3A2AJT9 711 aaKnown RBP19.96■□□□□ 0.79
SS18-209ENST00000578595 DAPK3O43293 454 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms