RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ARHGAP20Q9P2F6 1191 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 A0A087WV48 116 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 BECN2A8MW95 431 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 CBX4O00257 560 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 BIN1O00499 593 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 SLC7A4O43246 635 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 CCR1P32246 355 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 RXRGP48443 463 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 ARRB1P49407 418 aaPredicted RBP21.7■■□□□ 1.06
VPS53-216ENST00000574029 NUMBP49757 651 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 METAP1P53582 386 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 CDK17Q00537 523 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 DNAJC3Q13217 504 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 NAPEPLDQ6IQ20 393 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 FBXL22Q6P050 247 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 DEFB106AQ8N104 65 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 EID2Q8N6I1 236 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 MFSD2AQ8NA29 543 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 FAM81BQ96LP2 452 aa21.7■■□□□ 1.06
VPS53-216ENST00000574029 PLRG1O43660 514 aaKnown RBP21.69■■□□□ 1.06
VPS53-216ENST00000574029 ATP9BO43861 1147 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 RFPL3O75679 317 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 EFHC1Q5JVL4 640 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 GJB7Q6PEY0 223 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 TRIM65Q6PJ69 517 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 DSG4Q86SJ6 1040 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 PRPF39Q86UA1 669 aaKnown RBP21.69■■□□□ 1.06
VPS53-216ENST00000574029 OXR1Q8N573 874 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 OR8D1Q8WZ84 308 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 TSC1Q92574 1164 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 LRIG1Q96JA1 1093 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 PPP1R9BQ96SB3 815 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 CPXM1Q96SM3 734 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 DDIT4Q9NX09 232 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 SARDHQ9UL12 918 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 APC2O95996 2303 aa21.69■■□□□ 1.06
VPS53-216ENST00000574029 ACACAQ13085 2346 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 PLK4O00444 970 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 HSF2BPO75031 334 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 RTN2O75298 545 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 FGFR1OPO95684 399 aaKnown RBP21.68■■□□□ 1.06
VPS53-216ENST00000574029 NUDT1P36639 197 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 ACADVLP49748 655 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 CENPCQ03188 943 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 BNIP3Q12983 259 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 MTA1Q13330 715 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 SFMBT2Q5VUG0 894 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 FAM46CQ5VWP2 391 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 KANSL1Q7Z3B3 1105 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 IQCHQ86VS3 1027 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 SPATS2Q86XZ4 545 aaKnown RBP21.68■■□□□ 1.06
VPS53-216ENST00000574029 OR52K2Q8NGK3 314 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 PPP1R13BQ96KQ4 1090 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 RPRD1AQ96P16 312 aaPredicted RBP21.68■■□□□ 1.06
VPS53-216ENST00000574029 FEM1AQ9BSK4 669 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 SLC25A13Q9UJS0 675 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 PPM1HQ9ULR3 514 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 PCDHGC3Q9UN70 934 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 DMTF1Q9Y222 760 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 OR51B4Q9Y5P0 310 aa21.68■■□□□ 1.06
VPS53-216ENST00000574029 FASNP49327 2511 aaKnown RBP21.67■■□□□ 1.06
VPS53-216ENST00000574029 GOLGA4Q13439 2230 aaKnown RBP21.67■■□□□ 1.06
VPS53-216ENST00000574029 SYNJ2BP-COX16A0A087WUM0 186 aa21.67■■□□□ 1.06
VPS53-216ENST00000574029 ALOX15BO15296 676 aa21.67■■□□□ 1.06
VPS53-216ENST00000574029 SLC9A1P19634 815 aa21.67■■□□□ 1.06
VPS53-216ENST00000574029 HNF1BP35680 557 aa21.67■■□□□ 1.06
VPS53-216ENST00000574029 ANP32AP39687 249 aaKnown RBP21.67■■□□□ 1.06
VPS53-216ENST00000574029 IRAK1P51617 712 aa21.67■■□□□ 1.06
VPS53-216ENST00000574029 AUHQ13825 339 aaKnown RBP21.67■■□□□ 1.06
VPS53-216ENST00000574029 TRIM69Q86WT6 500 aa21.67■■□□□ 1.06
VPS53-216ENST00000574029 RNF34Q969K3 372 aa21.67■■□□□ 1.06
VPS53-216ENST00000574029 CRACR2AQ9BSW2 395 aa21.67■■□□□ 1.06
VPS53-216ENST00000574029 COX16Q9P0S2 106 aa21.67■■□□□ 1.06
VPS53-216ENST00000574029 CELSR3Q9NYQ7 3312 aa21.67■■□□□ 1.06
VPS53-216ENST00000574029 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.66■■□□□ 1.06
VPS53-216ENST00000574029 MCF2LO15068 1137 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 JUPP14923 745 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 CLDN6P56747 220 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 CNTN1Q12860 1018 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 OVGP1Q12889 678 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 ZNF177Q13360 481 aaPredicted RBP21.66■■□□□ 1.06
VPS53-216ENST00000574029 DLG2Q15700 870 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 ARHGAP44Q17R89 818 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 C5orf22Q49AR2 442 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 ACCSLQ4AC99 568 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 AGBL4Q5VU57 503 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 SMYD5Q6GMV2 418 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 SHC3Q92529 594 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 NXPE2Q96DL1 559 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 APEX2Q9UBZ4 518 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 VANGL2Q9ULK5 521 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 HS3ST4Q9Y661 456 aa21.66■■□□□ 1.06
VPS53-216ENST00000574029 C1QTNF3-AMACRE9PGA6 284 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 MAGEC1O60732 1142 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 GRAP2O75791 330 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 MAT2AP31153 395 aaKnown RBP21.65■■□□□ 1.06
VPS53-216ENST00000574029 USP8P40818 1118 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 APBA1Q02410 837 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 C6orf118Q5T5N4 469 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 FBXL19Q6PCT2 694 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms