RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 KRT85P78386 507 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 INCA1Q0VD86 236 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 SPIDRQ14159 915 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 ZNF542PQ5EBM4 170 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 PITRM1Q5JRX3 1037 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 BSPRYQ5W0U4 402 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 PTRH1Q86Y79 214 aaKnown RBP11.44□□□□□ -0.58
VPS53-207ENST00000570510 SIX6OS1Q8N1H7 587 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 FAM26EQ8N5C1 309 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 IQUBQ8NA54 791 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 WDR48Q8TAF3 677 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 OR8D1Q8WZ84 308 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 KLK6Q92876 244 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 RNF34Q969K3 372 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 PRR11Q96HE9 360 aaPredicted RBP11.44□□□□□ -0.58
VPS53-207ENST00000570510 MRGPRX3Q96LB0 322 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 IL12RB2Q99665 862 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 UBXN6Q9BZV1 441 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 STRADBQ9C0K7 418 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 ABCC13Q9NSE7 274 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 PLD2O14939 933 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 MUSKO15146 869 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 BNIP3LO60238 219 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 ACSL4O60488 711 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 HLA-DRAP01903 254 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 DRD3P35462 400 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 CLDN10P78369 228 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 CNTN1Q12860 1018 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 NR0B2Q15466 257 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 TBR1Q16650 682 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 KNOP1Q1ED39 458 aaKnown RBP11.43□□□□□ -0.58
VPS53-207ENST00000570510 ZACNQ401N2 412 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 GUSBP11Q6P575 273 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 MMS22LQ6ZRQ5 1243 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 SV2AQ7L0J3 742 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 EPM2AIP1Q7L775 607 aaPredicted RBP11.43□□□□□ -0.58
VPS53-207ENST00000570510 PTAR1Q7Z6K3 402 aaPredicted RBP11.43□□□□□ -0.58
VPS53-207ENST00000570510 C12orf56Q8IXR9 622 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 FBXO39Q8N4B4 442 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 OR13H1Q8NG92 308 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 NDRG1Q92597 394 aaKnown RBP11.43□□□□□ -0.58
VPS53-207ENST00000570510 PTPRN2Q92932 1015 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 IFT43Q96FT9 208 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 NIF3L1Q9GZT8 377 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 EPB41L5Q9HCM4 733 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 PREBQ9HCU5 417 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 DYRK4Q9NR20 520 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 FAM13BQ9NYF5 915 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 HESX1Q9UBX0 185 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 INTS6Q9UL03 887 aaKnown RBP11.43□□□□□ -0.58
VPS53-207ENST00000570510 MAN2B2Q9Y2E5 1009 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 NOTCH2Q04721 2471 aa11.43□□□□□ -0.58
VPS53-207ENST00000570510 SPTAN1Q13813 2472 aaKnown RBP11.43□□□□□ -0.58
VPS53-207ENST00000570510 ITIH6Q6UXX5 1313 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 A0A1W2PNU3 283 aaPredicted RBP11.42□□□□□ -0.58
VPS53-207ENST00000570510 PMS2P1A4D2B8 440 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 TMX2-CTNND1H3BSU7 103 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 LZTS3O60299 673 aaPredicted RBP11.42□□□□□ -0.58
VPS53-207ENST00000570510 PCDH8O95206 1070 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 JMJD7P0C870 316 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 HNRNPA2B1P22626 353 aaKnown RBP11.42□□□□□ -0.58
VPS53-207ENST00000570510 SLC6A4P31645 630 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 TBX4P57082 545 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 RPS24P62847 133 aaKnown RBP11.42□□□□□ -0.58
VPS53-207ENST00000570510 DLG4P78352 724 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 SULT2A1Q06520 285 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 EIF3IQ13347 325 aaKnown RBP11.42□□□□□ -0.58
VPS53-207ENST00000570510 NCAPHQ15003 741 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 TGIF1Q15583 401 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 IGFBP7Q16270 282 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 RAB41Q5JT25 222 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 PM20D1Q6GTS8 502 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 Q6ZSR6 202 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 DCP2Q8IU60 420 aaKnown RBP11.42□□□□□ -0.58
VPS53-207ENST00000570510 CFAP52Q8N1V2 620 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 ANKRD52Q8NB46 1076 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 FAM174AQ8TBP5 190 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 PLEKHO2Q8TD55 490 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 NAT6Q93015 286 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 CCDC34Q96HJ3 373 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 SLC39A2Q9NP94 309 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 FZD3Q9NPG1 666 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 KBTBD4Q9NVX7 518 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 GEMIN8Q9NWZ8 242 aaKnown RBP11.42□□□□□ -0.58
VPS53-207ENST00000570510 KCNK4Q9NYG8 393 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 FRMD4BQ9Y2L6 1034 aa11.42□□□□□ -0.58
VPS53-207ENST00000570510 FARP1Q9Y4F1 1045 aaPredicted RBP11.42□□□□□ -0.58
VPS53-207ENST00000570510 LY6G6EA0A0G2JKS1 128 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 FAM237AA0A1B0GTK4 181 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 A0A1W2PQU0 124 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 BLACEA4D250 179 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 EME2A4GXA9 379 aaPredicted RBP11.41□□□□□ -0.58
VPS53-207ENST00000570510 A6NNZ2 444 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 IKBKBO14920 756 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 GIMD1P0DJR0 217 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 LIPCP11150 499 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 CMA1P23946 247 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 NUMBP49757 651 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 STK19P49842 368 aaPredicted RBP11.41□□□□□ -0.58
VPS53-207ENST00000570510 METAP1P53582 386 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms