RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CCDC38Q502W7 563 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 TEX44Q53QW1 395 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 RAB6CQ53S08 254 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 ANKRD20A2Q5SQ80 823 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 ANKRD20A1Q5TYW2 823 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 RASIP1Q5U651 963 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 ANKRD20A3Q5VUR7 823 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 ZNF449Q6P9G9 518 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 LILRA6Q6PI73 481 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 NPNTQ6UXI9 565 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 ZNF783Q6ZMS7 281 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 PID1Q7Z2X4 250 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 LINC00523Q86TU6 105 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 TDRPQ86YL5 185 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 CCDC117Q8IWD4 279 aaPredicted RBP8.17□□□□□ -1.1
VPS39-213ENST00000570062 C7orf61Q8IZ16 206 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 PYROXD2Q8N2H3 581 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 ATPAF2Q8N5M1 289 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 ZNF511Q8NB15 262 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 ATP11CQ8NB49 1132 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 KLHL23Q8NBE8 558 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 TSEN2Q8NCE0 465 aaKnown RBP8.17□□□□□ -1.1
VPS39-213ENST00000570062 FAM76AQ8TAV0 307 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 GIPC2Q8TF65 315 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 ATP6V1G3Q96LB4 118 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 KLHL5Q96PQ7 755 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 FAM118BQ9BPY3 351 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 VN1R3Q9BXE9 311 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 SIK2Q9H0K1 926 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 RAB6CQ9H0N0 254 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 LMAN2LQ9H0V9 348 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 CDC42EP4Q9H3Q1 356 aaKnown RBP8.17□□□□□ -1.1
VPS39-213ENST00000570062 CNOT10Q9H9A5 744 aaKnown RBP8.17□□□□□ -1.1
VPS39-213ENST00000570062 TMBIM4Q9HC24 238 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 SAYSD1Q9NPB0 183 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 TMEM248Q9NWD8 314 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 PSD3Q9NYI0 1048 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 SENP1Q9P0U3 644 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 KLHL8Q9P2G9 620 aaPredicted RBP8.17□□□□□ -1.1
VPS39-213ENST00000570062 SLC24A2Q9UI40 661 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 LSM7Q9UK45 103 aaKnown RBP8.17□□□□□ -1.1
VPS39-213ENST00000570062 HS3ST4Q9Y661 456 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 BRCA2P51587 3418 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 H0YGN5 161 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 RNF103O00237 685 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 ZNF197O14709 1029 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 TP73O15350 636 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 RGS16O15492 202 aaPredicted RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 MFSD11O43934 449 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 ACSL4O60488 711 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 XYLBO75191 536 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 CLDN11O75508 207 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 SEC24AO95486 1093 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 VNN2O95498 520 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 SYF2O95926 243 aaKnown RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 APRTP07741 180 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 CNPP09543 421 aaKnown RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 RPL17P18621 184 aaKnown RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 STX2P32856 288 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 CTNNB1P35222 781 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 CHKAP35790 457 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 MMP13P45452 471 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 NPY2RP49146 381 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 GDF10P55107 478 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 CDH4P55283 916 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 IFI35P80217 286 aaPredicted RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 SLC10A2Q12908 348 aaPredicted RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 PDIA2Q13087 525 aaKnown RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 RFTN1Q14699 578 aaPredicted RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 UAP1Q16222 522 aaPredicted RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 KRT71Q3SY84 523 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 ARHGAP15Q53QZ3 475 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 MS4A13Q5J8X5 152 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 ADGRF1Q5T601 910 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 SDHAF4Q5VUM1 108 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 AFMIDQ63HM1 303 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 DESI1Q6ICB0 168 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 NAPEPLDQ6IQ20 393 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 LRRC8BQ6P9F7 803 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 CHST9Q7L1S5 443 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 SETD3Q86TU7 594 aaPredicted RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 MIB1Q86YT6 1006 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 ZSCAN1Q8NBB4 408 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 KREMEN2Q8NCW0 462 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 GABPB2Q8TAK5 448 aaPredicted RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 PPP2R3CQ969Q6 453 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 TEKT5Q96M29 485 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 ZNF599Q96NL3 588 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 RPRD1AQ96P16 312 aaPredicted RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 TCF25Q9BQ70 676 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 COL25A1Q9BXS0 654 aaPredicted RBP8.16□□□□□ -1.1
VPS39-213ENST00000570062 MAGEH1Q9H213 219 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 CRISPLD1Q9H336 500 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 SEMA4AQ9H3S1 761 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 ETNK1Q9HBU6 452 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 ENTPD7Q9NQZ7 604 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 TLR9Q9NR96 1032 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 OSER1Q9NX31 292 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 STOML2Q9UJZ1 356 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms