RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 NADSYN1Q6IA69 706 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 SV2AQ7L0J3 742 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 APCDD1Q8J025 514 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 SLC22A18ASQ8N1D0 253 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 KDM1BQ8NB78 822 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 RNF139Q8WU17 664 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 RNF166Q96A37 237 aaPredicted RBP12.16□□□□□ -0.46
CLK3-222ENST00000568232 FAM131CQ96AQ9 280 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 GRAMD1AQ96CP6 724 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 HEXIM2Q96MH2 286 aaKnown RBP12.16□□□□□ -0.46
CLK3-222ENST00000568232 SLC25A18Q9H1K4 315 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 KDM4CQ9H3R0 1056 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 USP29Q9HBJ7 922 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 OLA1Q9NTK5 396 aaKnown RBP12.16□□□□□ -0.46
CLK3-222ENST00000568232 CEP83Q9Y592 693 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 SPENQ96T58 3664 aaKnown RBP12.15□□□□□ -0.46
CLK3-222ENST00000568232 NEMP2A6NFY4 417 aa12.15□□□□□ -0.46
CLK3-222ENST00000568232 LATS1O95835 1130 aa12.15□□□□□ -0.46
CLK3-222ENST00000568232 SRPRAP08240 638 aaKnown RBP12.15□□□□□ -0.46
CLK3-222ENST00000568232 WT1P19544 449 aaPredicted RBP12.15□□□□□ -0.46
CLK3-222ENST00000568232 NUDT1P36639 197 aa12.15□□□□□ -0.46
CLK3-222ENST00000568232 PIK3CAP42336 1068 aa12.15□□□□□ -0.46
CLK3-222ENST00000568232 SNRPFP62306 86 aaKnown RBP12.15□□□□□ -0.46
CLK3-222ENST00000568232 CEBPZQ03701 1054 aaKnown RBP12.15□□□□□ -0.46
CLK3-222ENST00000568232 AGBL4Q5VU57 503 aa12.15□□□□□ -0.46
CLK3-222ENST00000568232 BSPRYQ5W0U4 402 aa12.15□□□□□ -0.46
CLK3-222ENST00000568232 BRAPQ7Z569 592 aa12.15□□□□□ -0.46
CLK3-222ENST00000568232 C12orf56Q8IXR9 622 aa12.15□□□□□ -0.46
CLK3-222ENST00000568232 CFAP52Q8N1V2 620 aa12.15□□□□□ -0.46
CLK3-222ENST00000568232 TAF4BQ92750 862 aa12.15□□□□□ -0.46
CLK3-222ENST00000568232 DUSP23Q9BVJ7 150 aa12.15□□□□□ -0.46
CLK3-222ENST00000568232 DNAJC28Q9NX36 388 aa12.15□□□□□ -0.46
CLK3-222ENST00000568232 TFIP11Q9UBB9 837 aaKnown RBP12.15□□□□□ -0.46
CLK3-222ENST00000568232 SPTAN1Q13813 2472 aaKnown RBP12.15□□□□□ -0.46
CLK3-222ENST00000568232 CCDC187A0A096LP49 1063 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 YJEFN3A6XGL0 299 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 E7ENQ6 273 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 ACSL4O60488 711 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 RNGTTO60942 597 aaKnown RBP12.14□□□□□ -0.47
CLK3-222ENST00000568232 TAS2R38P59533 333 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 CDH18Q13634 790 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 ELAVL3Q14576 367 aaKnown RBP12.14□□□□□ -0.47
CLK3-222ENST00000568232 C1orf220Q5T0J3 134 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 RNF219Q5W0B1 726 aaPredicted RBP12.14□□□□□ -0.47
CLK3-222ENST00000568232 OR6B2Q6IFH4 312 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 ZCCHC8Q6NZY4 707 aaKnown RBP12.14□□□□□ -0.47
CLK3-222ENST00000568232 C14orf80Q86SX3 495 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 VASH2Q86V25 355 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 JAMLQ86YT9 394 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 HTR3CQ8WXA8 447 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 UBXN6Q9BZV1 441 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 SLC39A2Q9NP94 309 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 RYDENQ9NUL5 291 aaKnown RBP12.14□□□□□ -0.47
CLK3-222ENST00000568232 EVA1BQ9NVM1 165 aa12.14□□□□□ -0.47
CLK3-222ENST00000568232 GEMIN8Q9NWZ8 242 aaKnown RBP12.14□□□□□ -0.47
CLK3-222ENST00000568232 ANKRD17O75179 2603 aaKnown RBP12.14□□□□□ -0.47
CLK3-222ENST00000568232 A0A1W2PQU0 124 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 EME2A4GXA9 379 aaPredicted RBP12.13□□□□□ -0.47
CLK3-222ENST00000568232 ENO4A6NNW6 628 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 MUSKO15146 869 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 IRAK2O43187 625 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 SLC7A4O43246 635 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 HGFP14210 728 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 CASP1P29466 404 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 MLLT3P42568 568 aaPredicted RBP12.13□□□□□ -0.47
CLK3-222ENST00000568232 SLC11A2P49281 568 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 DEFB133Q30KQ1 61 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 FAM173BQ6P4H8 233 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 GCNT7Q6ZNI0 430 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 FAM26EQ8N5C1 309 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 HJURPQ8NCD3 748 aaPredicted RBP12.13□□□□□ -0.47
CLK3-222ENST00000568232 ZNF548Q8NEK5 533 aaPredicted RBP12.13□□□□□ -0.47
CLK3-222ENST00000568232 TATDN2Q93075 761 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 SPAG5Q96R06 1193 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 TNMDQ9H2S6 317 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 SYNDIG1Q9H7V2 258 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 CYP3A43Q9HB55 503 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 KBTBD4Q9NVX7 518 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 KLF15Q9UIH9 416 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 DOCK9Q9BZ29 2069 aa12.13□□□□□ -0.47
CLK3-222ENST00000568232 AGRPO00253 132 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 PLD2O14939 933 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 TCEA3O75764 348 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 MOCS3O95396 460 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 IGLV3-27P01718 113 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 UGT1A5P35504 534 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 AFMP43652 599 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 HNRNPKP61978 463 aaKnown RBP eCLIP12.12□□□□□ -0.47
CLK3-222ENST00000568232 ADIGQ0VDE8 80 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 FZD2Q14332 565 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 KNOP1Q1ED39 458 aaKnown RBP12.12□□□□□ -0.47
CLK3-222ENST00000568232 ZNF284Q2VY69 593 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 Q6ZSR6 202 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 B3GNT8Q7Z7M8 397 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 FBXO39Q8N4B4 442 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 ZNF557Q8N988 423 aaPredicted RBP12.12□□□□□ -0.47
CLK3-222ENST00000568232 ANKRD52Q8NB46 1076 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 SLC4A11Q8NBS3 891 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 TPCN2Q8NHX9 752 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 ZNF564Q8TBZ8 553 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms