RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 MDGA2Q7Z553 956 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 TMEM200AQ86VY9 491 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 PRR26Q8N8Z3 221 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 DEPTORQ8TB45 409 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 IPO4Q8TEX9 1081 aaKnown RBP3.18□□□□□ -1.9
VPS35-207ENST00000568191 KIAA1191Q96A73 305 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 SORBS1Q9BX66 1292 aaKnown RBP3.18□□□□□ -1.9
VPS35-207ENST00000568191 KRTAP2-2Q9BYT5 123 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 B3GNT4Q9C0J1 378 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 ARL15Q9NXU5 204 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 RAP2CQ9Y3L5 183 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 PTGDR2Q9Y5Y4 395 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.17□□□□□ -1.9
VPS35-207ENST00000568191 A0A1B0GVT2 93 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 C17orf102A2RUQ5 167 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 KIF28PB7ZC32 967 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 STMND1H3BQB6 276 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 M0QYT0 321 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 LIASO43766 372 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 MYZAPP0CAP1 466 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 KLRK1P26718 216 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 GSTM2P28161 218 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 HOXA11P31270 313 aaPredicted RBP3.17□□□□□ -1.9
VPS35-207ENST00000568191 RCAN1P53805 252 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 FOXL2P58012 376 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 GPS2Q13227 327 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 ALKBH1Q13686 389 aaKnown RBP3.17□□□□□ -1.9
VPS35-207ENST00000568191 RPS6KA2Q15349 733 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 SHBQ15464 509 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 ODF3L2Q3SX64 289 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 PLK5Q496M5 336 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 INO80DQ53TQ3 878 aaPredicted RBP3.17□□□□□ -1.9
VPS35-207ENST00000568191 C9orf50Q5SZB4 431 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 FAM171A1Q5VUB5 890 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 HEPHL1Q6MZM0 1159 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 PGBD2Q6P3X8 592 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 FAM186BQ8IYM0 893 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 RBMXL3Q8N7X1 1067 aaKnown RBP3.17□□□□□ -1.9
VPS35-207ENST00000568191 OR14A16Q8NHC5 309 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 CPT1BQ92523 772 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 IP6K1Q92551 441 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 GFM1Q96RP9 751 aaKnown RBP3.17□□□□□ -1.9
VPS35-207ENST00000568191 WDR77Q9BQA1 342 aaPredicted RBP3.17□□□□□ -1.9
VPS35-207ENST00000568191 IFT27Q9BW83 186 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 TMLHEQ9NVH6 421 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 FBXO4Q9UKT5 387 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 ICAM5Q9UMF0 924 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 PHTF1Q9UMS5 762 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 PCDHGB1Q9Y5G3 927 aa3.17□□□□□ -1.9
VPS35-207ENST00000568191 SRPRBQ9Y5M8 271 aaKnown RBP3.17□□□□□ -1.9
VPS35-207ENST00000568191 TRIP12Q14669 1992 aaPredicted RBP3.16□□□□□ -1.9
VPS35-207ENST00000568191 EVPLQ92817 2033 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 GOLGA6L3A6NEY3 463 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 BECN2A8MW95 431 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 BTBD18B2RXH4 712 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 INAFM1C9JVW0 142 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 FFAR2O15552 330 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 HNRNPRO43390 633 aaKnown RBP3.16□□□□□ -1.9
VPS35-207ENST00000568191 RGS14O43566 566 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 TMCC1O94876 653 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 ITGA2BP08514 1039 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 ENO3P13929 434 aaPredicted RBP3.16□□□□□ -1.9
VPS35-207ENST00000568191 CHRNB2P17787 502 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 TNFSF8P32971 234 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 AVPR1AP37288 418 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 CDK7P50613 346 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 Q0VFX4 171 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 C5orf22Q49AR2 442 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 TDRD12Q587J7 1177 aaKnown RBP3.16□□□□□ -1.9
VPS35-207ENST00000568191 TMEM268Q5VZI3 342 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 NCAPH2Q6IBW4 605 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 KRTAP5-11Q6L8G4 156 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 SLC30A9Q6PML9 568 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 RAB11FIP2Q7L804 512 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 SRLQ86TD4 932 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 NR2C2APQ86WQ0 139 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 GPSM1Q86YR5 675 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 CCDC117Q8IWD4 279 aaPredicted RBP3.16□□□□□ -1.9
VPS35-207ENST00000568191 CMASQ8NFW8 434 aaPredicted RBP3.16□□□□□ -1.9
VPS35-207ENST00000568191 PARD3BQ8TEW8 1205 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 SLC35F5Q8WV83 523 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 MCRS1Q96EZ8 462 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 TMEM41AQ96HV5 264 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 URB1-AS1Q96HZ7 61 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 DUX5Q96PT3 197 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 NPAS1Q99742 590 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 TRIM31Q9BZY9 425 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.16□□□□□ -1.9
VPS35-207ENST00000568191 MAGEH1Q9H213 219 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 HIPK3Q9H422 1215 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 RMI1Q9H9A7 625 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 PDE11AQ9HCR9 933 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 ZNF304Q9HCX3 659 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 FNIP2Q9P278 1114 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 CNTN6Q9UQ52 1028 aa3.16□□□□□ -1.9
VPS35-207ENST00000568191 SLC38A8A6NNN8 435 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 EYA2O00167 538 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 ASNA1O43681 348 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 MMP3P08254 477 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 PLA2G2AP14555 144 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms