RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 GALNT15Q8N3T1 639 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 MLKLQ8NB16 471 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 OR52K2Q8NGK3 314 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 OR14C36Q8NHC7 312 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 RNF34Q969K3 372 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 RPRD1AQ96P16 312 aaPredicted RBP17.62■□□□□ 0.41
CLN3-216ENST00000565316 KDM4CQ9H3R0 1056 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 COX16Q9P0S2 106 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 DKK4Q9UBT3 224 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 TBC1D30Q9Y2I9 924 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 HS3ST4Q9Y661 456 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 IGSF10Q6WRI0 2623 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 PLXNA2O75051 1894 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 SLC7A4O43246 635 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 PAGE1O75459 146 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 CLDN11O75508 207 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 NOS2P35228 1153 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 KRT9P35527 623 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 METAP1P53582 386 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 IL9RQ01113 521 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 SMAD1Q15797 465 aaKnown RBP17.61■□□□□ 0.41
CLN3-216ENST00000565316 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.61■□□□□ 0.41
CLN3-216ENST00000565316 DSG4Q86SJ6 1040 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 C14orf80Q86SX3 495 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 SLC47A2Q86VL8 602 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 FAM71AQ8IYT1 594 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 SAP25Q8TEE9 199 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 AASDHPPTQ9NRN7 309 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 RRN3Q9NYV6 651 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 DNAJC12Q9UKB3 198 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 SARDHQ9UL12 918 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 VANGL2Q9ULK5 521 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 PPM1HQ9ULR3 514 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 LHX6Q9UPM6 363 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 GPSM3Q9Y4H4 160 aa17.61■□□□□ 0.41
CLN3-216ENST00000565316 TBC1D3DA0A087WVF3 549 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 TBC1D3IA0A087WXS9 549 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 TBC1D3EA0A087X179 549 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 TBC1D3KA0A087X1G2 549 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.6■□□□□ 0.41
CLN3-216ENST00000565316 TBC1D3FA6NER0 549 aaPredicted RBP17.6■□□□□ 0.41
CLN3-216ENST00000565316 GOLGA8CPA6NN73 597 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 TBC1D3LB9A6J9 549 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 ALOX15BO15296 676 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 YKT6O15498 198 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 TBC1D3HP0C7X1 549 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 MTIF2P46199 727 aaKnown RBP17.6■□□□□ 0.41
CLN3-216ENST00000565316 NUMBP49757 651 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 NXPH1P58417 271 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 PPP2CBP62714 309 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 PPP2CAP67775 309 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 NME3Q13232 169 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 ZNF177Q13360 481 aaPredicted RBP17.6■□□□□ 0.41
CLN3-216ENST00000565316 CAMK2BQ13554 666 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 MAN2A1Q16706 1144 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 PRAMEF14Q5SWL7 426 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 FAM46CQ5VWP2 391 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 TBC1D3GQ6DHY5 549 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 TBC1D3CQ6IPX1 549 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 ZDHHC17Q8IUH5 632 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 TBC1D3Q8IZP1 549 aaPredicted RBP17.6■□□□□ 0.41
CLN3-216ENST00000565316 OR8D1Q8WZ84 308 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 NT5C3BQ969T7 300 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 SERAC1Q96JX3 654 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 NPY6RQ99463 290 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 ERVMER34-1Q9H9K5 563 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 GDF3Q9NR23 364 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 PIGVQ9NUD9 493 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 ARHGEF38Q9NXL2 777 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 ARHGAP20Q9P2F6 1191 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 FTSJ1Q9UET6 329 aa17.6■□□□□ 0.41
CLN3-216ENST00000565316 M0QYT0 321 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 TLR4O00206 839 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 MCF2LO15068 1137 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 PLRG1O43660 514 aaKnown RBP17.59■□□□□ 0.41
CLN3-216ENST00000565316 CDH5P33151 784 aaPredicted RBP17.59■□□□□ 0.41
CLN3-216ENST00000565316 NUDT1P36639 197 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 RXRGP48443 463 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 CXCR3P49682 368 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 CDH4P55283 916 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 BPIFB4P59827 614 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 DLG2Q15700 870 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 BRMS1LQ5PSV4 323 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 NAPEPLDQ6IQ20 393 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 ZNF683Q8IZ20 524 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 SH2D3CQ8N5H7 860 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 MDM1Q8TC05 714 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 PGAP3Q96FM1 320 aaPredicted RBP17.59■□□□□ 0.41
CLN3-216ENST00000565316 ANLNQ9NQW6 1124 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 SLC25A13Q9UJS0 675 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 VPS28Q9UK41 221 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 HS3ST2Q9Y278 367 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 PCDHGA1Q9Y5H4 931 aa17.59■□□□□ 0.41
CLN3-216ENST00000565316 NYNRINQ9P2P1 1898 aaKnown RBP17.59■□□□□ 0.41
CLN3-216ENST00000565316 COL5A1P20908 1838 aaPredicted RBP17.59■□□□□ 0.41
CLN3-216ENST00000565316 I6L893 689 aaPredicted RBP17.58■□□□□ 0.4
CLN3-216ENST00000565316 PLK4O00444 970 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 RTN2O75298 545 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 ADCY5O95622 1261 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 PNMA6AP0CW24 399 aaPredicted RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms