RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PLK1P53350 603 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 CENPCQ03188 943 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 SULT2A1Q06520 285 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 SLC12A1Q13621 1099 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 ARHGAP44Q17R89 818 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 POM121L1PQ3SYA9 428 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 ACCSLQ4AC99 568 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 SPATS2Q86XZ4 545 aaKnown RBP17.37■□□□□ 0.37
CLN3-211ENST00000564091 OR52K2Q8NGK3 314 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 RPRD1AQ96P16 312 aaPredicted RBP17.37■□□□□ 0.37
CLN3-211ENST00000564091 SLC2A13Q96QE2 648 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 SPAG5Q96R06 1193 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 SCUBE2Q9NQ36 999 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 ARHGAP20Q9P2F6 1191 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 PCDHGA1Q9Y5H4 931 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 IGSF10Q6WRI0 2623 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 PLXNB3Q9ULL4 1909 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 A0A1B0GVM2 712 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 TCAF2A6NFQ2 919 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 LATO43561 262 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 SLC9A1P19634 815 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 CCR1P32246 355 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 ARRB1P49407 418 aaPredicted RBP17.36■□□□□ 0.37
CLN3-211ENST00000564091 AUHQ13825 339 aaKnown RBP17.36■□□□□ 0.37
CLN3-211ENST00000564091 SLC45A4Q5BKX6 768 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 RABGAP1LQ5R372 815 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 PRPF39Q86UA1 669 aaKnown RBP17.36■□□□□ 0.37
CLN3-211ENST00000564091 CREBRFQ8IUR6 639 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 PASD1Q8IV76 773 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 ALG14Q96F25 216 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 CRELD1Q96HD1 420 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 PPP1R13BQ96KQ4 1090 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 BBC3Q96PG8 261 aaPredicted RBP17.36■□□□□ 0.37
CLN3-211ENST00000564091 CPXM1Q96SM3 734 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 VANGL2Q9ULK5 521 aa17.36■□□□□ 0.37
CLN3-211ENST00000564091 KNTC1P50748 2209 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 BNIP3LO60238 219 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 GADD45BO75293 160 aaPredicted RBP17.35■□□□□ 0.37
CLN3-211ENST00000564091 RFPL3O75679 317 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 SLC2A3P11169 496 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 ACADVLP49748 655 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 CNTN1Q12860 1018 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 NME3Q13232 169 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 DLG2Q15700 870 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 TTC39BQ5VTQ0 682 aaPredicted RBP17.35■□□□□ 0.37
CLN3-211ENST00000564091 NAPEPLDQ6IQ20 393 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 TRIM65Q6PJ69 517 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 ENOSF1Q7L5Y1 443 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 C14orf80Q86SX3 495 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 MFSD2AQ8NA29 543 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 OR8D1Q8WZ84 308 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 FAM131CQ96AQ9 280 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 FEM1AQ9BSK4 669 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 PPM1HQ9ULR3 514 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 TPX2Q9ULW0 747 aaKnown RBP17.35■□□□□ 0.37
CLN3-211ENST00000564091 CA5BQ9Y2D0 317 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 HS3ST4Q9Y661 456 aa17.35■□□□□ 0.37
CLN3-211ENST00000564091 A0A087WV48 116 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.34■□□□□ 0.37
CLN3-211ENST00000564091 YKT6O15498 198 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 PLRG1O43660 514 aaKnown RBP17.34■□□□□ 0.37
CLN3-211ENST00000564091 ATP9BO43861 1147 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 HSF2BPO75031 334 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 GLI1P08151 1106 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 RXRGP48443 463 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 OXCT1P55809 520 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 TARDBPQ13148 414 aaKnown RBP eCLIP17.34■□□□□ 0.37
CLN3-211ENST00000564091 ZNF177Q13360 481 aaPredicted RBP17.34■□□□□ 0.37
CLN3-211ENST00000564091 EFHC1Q5JVL4 640 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 AGBL4Q5VU57 503 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 FAM46CQ5VWP2 391 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 OR6B2Q6IFH4 312 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 FAM183BPQ6ZVS7 135 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 Q6ZVU0 165 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 DSG4Q86SJ6 1040 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 TSC1Q92574 1164 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 DCBLD2Q96PD2 775 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 ERVMER34-1Q9H9K5 563 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 SLC25A13Q9UJS0 675 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 VPS28Q9UK41 221 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 OR51B4Q9Y5P0 310 aa17.34■□□□□ 0.37
CLN3-211ENST00000564091 SLC7A4O43246 635 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 SDC3O75056 442 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 PAGE1O75459 146 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 ERBB2P04626 1255 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 C1SP09871 688 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 ZNF18P17022 549 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 HES3Q5TGS1 186 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 SFMBT2Q5VUG0 894 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 C11orf57Q6ZUT1 292 aaPredicted RBP17.33■□□□□ 0.36
CLN3-211ENST00000564091 KANSL1Q7Z3B3 1105 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 C1orf131Q8NDD1 294 aaKnown RBP17.33■□□□□ 0.36
CLN3-211ENST00000564091 PIP4K2CQ8TBX8 421 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 SIK2Q9H0K1 926 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 KDM4CQ9H3R0 1056 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 ASNSD1Q9NWL6 643 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 APEX2Q9UBZ4 518 aa17.33■□□□□ 0.36
CLN3-211ENST00000564091 E9PAM4 449 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 C1QTNF3-AMACRE9PGA6 284 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 MCF2LO15068 1137 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 129.8 ms