RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 CNTN5O94779 1100 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 IGLV3-19P01714 112 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 GYPCP04921 128 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 PLEKP08567 350 aaPredicted RBP13.75□□□□□ -0.21
CLK3-213ENST00000563842 HOXD12P35452 270 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 ETFBP38117 255 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 CTSOP43234 321 aaPredicted RBP13.75□□□□□ -0.21
CLK3-213ENST00000563842 ID4P47928 161 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 TPMTP51580 245 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 ZNF33AQ06730 810 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 SCAPQ12770 1279 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 AASDHQ4L235 1098 aaPredicted RBP13.75□□□□□ -0.21
CLK3-213ENST00000563842 SYCP2LQ5T4T6 812 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 SH3PXD2AQ5TCZ1 1133 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 HGSNATQ68CP4 663 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 TMC6Q7Z403 805 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 SYT12Q8IV01 421 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 DRC7Q8IY82 874 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 FRMD1Q8N878 549 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 RNF214Q8ND24 703 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 FNIP1Q8TF40 1166 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 PIGKQ92643 395 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 ZNF653Q96CK0 615 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 ALG14Q96F25 216 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 RPL10LQ96L21 214 aaKnown RBP13.75□□□□□ -0.21
CLK3-213ENST00000563842 RSPH9Q9H1X1 276 aaPredicted RBP13.75□□□□□ -0.21
CLK3-213ENST00000563842 TMPRSS4Q9NRS4 437 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 WSB2Q9NYS7 404 aaPredicted RBP13.75□□□□□ -0.21
CLK3-213ENST00000563842 MPP6Q9NZW5 540 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 CNOT8Q9UFF9 292 aaKnown RBP13.75□□□□□ -0.21
CLK3-213ENST00000563842 ADAMTS1Q9UHI8 967 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 SLCO3A1Q9UIG8 710 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 NCKAP1Q9Y2A7 1128 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 OR51B4Q9Y5P0 310 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 SNX10Q9Y5X0 201 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 CACNA1EQ15878 2313 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 TTC34A8MYJ7 566 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 KHNYNO15037 678 aaKnown RBP13.74□□□□□ -0.21
CLK3-213ENST00000563842 SIN3BO75182 1162 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 RHOQP17081 205 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 PSMA2P25787 234 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 CASP14P31944 242 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 L1CAMP32004 1257 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 MAPKAPK2P49137 400 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 IRAK1P51617 712 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 RPS14P62263 151 aaKnown RBP13.74□□□□□ -0.21
CLK3-213ENST00000563842 SLC20A2Q08357 652 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 ACCSLQ4AC99 568 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 WDR45BQ5MNZ6 344 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 RWDD4Q6NW29 188 aaKnown RBP13.74□□□□□ -0.21
CLK3-213ENST00000563842 TFAP2DQ7Z6R9 452 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 DSG4Q86SJ6 1040 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 DCAF4L2Q8NA75 395 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 CADM4Q8NFZ8 388 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 CEP76Q8TAP6 659 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 NETO1Q8TDF5 533 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 TBC1D31Q96DN5 1066 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 TOE1Q96GM8 510 aaKnown RBP13.74□□□□□ -0.21
CLK3-213ENST00000563842 ZNF419Q96HQ0 510 aaPredicted RBP13.74□□□□□ -0.21
CLK3-213ENST00000563842 CCDC114Q96M63 670 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 PCED1AQ9H1Q7 454 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 ZNHIT6Q9NWK9 470 aaKnown RBP13.74□□□□□ -0.21
CLK3-213ENST00000563842 DONSONQ9NYP3 566 aa13.74□□□□□ -0.21
CLK3-213ENST00000563842 CDV3Q9UKY7 258 aaKnown RBP13.74□□□□□ -0.21
CLK3-213ENST00000563842 FARP1Q9Y4F1 1045 aaPredicted RBP13.74□□□□□ -0.21
CLK3-213ENST00000563842 CXorf51AA0A1B0GTR3 108 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 TMEM191CA6NGB0 347 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 EIF3CLB5ME19 914 aaKnown RBP13.73□□□□□ -0.21
CLK3-213ENST00000563842 ATP9BO43861 1147 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 ADH1BP00325 375 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 HNRNPH3P31942 346 aaKnown RBP13.73□□□□□ -0.21
CLK3-213ENST00000563842 HTR7P34969 479 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 STK19P49842 368 aaPredicted RBP13.73□□□□□ -0.21
CLK3-213ENST00000563842 CLCN6P51797 869 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 ELAVL3Q14576 367 aaKnown RBP13.73□□□□□ -0.21
CLK3-213ENST00000563842 PUM1Q14671 1186 aaKnown RBP eCLIP13.73□□□□□ -0.21
CLK3-213ENST00000563842 ACAP1Q15027 740 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 RAB6CQ53S08 254 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 C9orf64Q5T6V5 341 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 MANEALQ5VSG8 457 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 RETSATQ6NUM9 610 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 USP30Q70CQ3 517 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 ARMCX6Q7L4S7 300 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 SH2D3CQ8N5H7 860 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 CCDC185Q8N715 623 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 OR8K1Q8NGG5 319 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 OR52K2Q8NGK3 314 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 OR8D1Q8WZ84 308 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 PTPRN2Q92932 1015 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 EIF3CQ99613 913 aaKnown RBP13.73□□□□□ -0.21
CLK3-213ENST00000563842 EPAS1Q99814 870 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 NUSAP1Q9BXS6 441 aaKnown RBP13.73□□□□□ -0.21
CLK3-213ENST00000563842 BTBD1Q9H0C5 482 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 RAB6CQ9H0N0 254 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 SGK2Q9HBY8 427 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 TMEM248Q9NWD8 314 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 MYO1AQ9UBC5 1043 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 SUSD2Q9UGT4 822 aa13.73□□□□□ -0.21
CLK3-213ENST00000563842 EVLQ9UI08 416 aaPredicted RBP13.73□□□□□ -0.21
CLK3-213ENST00000563842 FZD10Q9ULW2 581 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms