RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 IPO11Q9UI26 975 aaKnown RBP21.77■■□□□ 1.08
CLN3-209ENST00000561689 CLUHO75153 1309 aa21.77■■□□□ 1.08
CLN3-209ENST00000561689 POLR3GO15318 223 aaPredicted RBP21.76■■□□□ 1.07
CLN3-209ENST00000561689 RNF40O75150 1001 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 CD68P34810 354 aaPredicted RBP21.76■■□□□ 1.07
CLN3-209ENST00000561689 C5orf22Q49AR2 442 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 CAPN12Q6ZSI9 719 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 CAND1Q86VP6 1230 aaKnown RBP21.76■■□□□ 1.07
CLN3-209ENST00000561689 TCEAL4Q96EI5 215 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 IGSF9Q9P2J2 1179 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 DNMT3BQ9UBC3 853 aaKnown RBP21.76■■□□□ 1.07
CLN3-209ENST00000561689 RSPH14Q9UHP6 348 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 TRHDEQ9UKU6 1024 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 GREM1O60565 184 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 RAMP2O60895 175 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 TPSB2P20231 275 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 GRIA1P42261 906 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 TPSAB1Q15661 275 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 RABGAP1LQ5R372 815 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 PDE12Q6L8Q7 609 aaKnown RBP21.76■■□□□ 1.07
CLN3-209ENST00000561689 PPP1R21Q6ZMI0 780 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 ZNF354CQ86Y25 554 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.76■■□□□ 1.07
CLN3-209ENST00000561689 CNTD1Q8N815 330 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 ZNF419Q96HQ0 510 aaPredicted RBP21.76■■□□□ 1.07
CLN3-209ENST00000561689 TEKT5Q96M29 485 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 VAT1Q99536 393 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 SLC46A2Q9BY10 475 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 SMG9Q9H0W8 520 aaKnown RBP21.76■■□□□ 1.07
CLN3-209ENST00000561689 HCFC2Q9Y5Z7 792 aa21.76■■□□□ 1.07
CLN3-209ENST00000561689 E7ESA3 106 aa21.75■■□□□ 1.07
CLN3-209ENST00000561689 MATN3O15232 486 aa21.75■■□□□ 1.07
CLN3-209ENST00000561689 PTPN2P17706 415 aa21.75■■□□□ 1.07
CLN3-209ENST00000561689 EIF3BP55884 814 aaKnown RBP21.75■■□□□ 1.07
CLN3-209ENST00000561689 POLD3Q15054 466 aaPredicted RBP21.75■■□□□ 1.07
CLN3-209ENST00000561689 TERF2Q15554 542 aa21.75■■□□□ 1.07
CLN3-209ENST00000561689 TTMPQ5BVD1 217 aa21.75■■□□□ 1.07
CLN3-209ENST00000561689 MCUQ8NE86 351 aa21.75■■□□□ 1.07
CLN3-209ENST00000561689 SHKBP1Q8TBC3 707 aa21.75■■□□□ 1.07
CLN3-209ENST00000561689 PYROXD1Q8WU10 500 aa21.75■■□□□ 1.07
CLN3-209ENST00000561689 GORASP1Q9BQQ3 440 aa21.75■■□□□ 1.07
CLN3-209ENST00000561689 ANAPC1Q9H1A4 1944 aa21.75■■□□□ 1.07
CLN3-209ENST00000561689 TRAV19A0A0A6YYK7 116 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 ARHGAP42A6NI28 874 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 GOLGA6L10A6NI86 522 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 SMIM23A6NLE4 172 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 J3KR12 359 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 MYZAPP0CAP1 466 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 NFKB1P19838 968 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 ACVRL1P37023 503 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 MAPKAPK2P49137 400 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 IFI35P80217 286 aaPredicted RBP21.74■■□□□ 1.07
CLN3-209ENST00000561689 KRT71Q3SY84 523 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 KCTD16Q68DU8 428 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 ZNF534Q76KX8 674 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 RTL10Q7L3V2 364 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 LRRC49Q8IUZ0 686 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 IGDCC3Q8IVU1 814 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 AGGF1Q8N302 714 aaeCLIP21.74■■□□□ 1.07
CLN3-209ENST00000561689 FBXO36Q8NEA4 188 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 PHACTR1Q9C0D0 580 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 GBA3Q9H227 469 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 TTLL3Q9Y4R7 772 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.74■■□□□ 1.07
CLN3-209ENST00000561689 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.74■■□□□ 1.07
CLN3-209ENST00000561689 EIF3HO15372 352 aaKnown RBP eCLIP21.74■■□□□ 1.07
CLN3-209ENST00000561689 RHOP08100 348 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 NTHL1P78549 312 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 SLC7A9P82251 487 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 SPARCL1Q14515 664 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 PPP2R2DQ66LE6 453 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 TIGD7Q6NT04 549 aaPredicted RBP21.74■■□□□ 1.07
CLN3-209ENST00000561689 OTOP3Q7RTS5 596 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 TTC25Q96NG3 672 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 VPS37BQ9H9H4 285 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 CFAP97Q9P2B7 532 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 STOML2Q9UJZ1 356 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 CHMP2BQ9UQN3 213 aa21.74■■□□□ 1.07
CLN3-209ENST00000561689 TLDC2A0PJX2 215 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 ELK3P41970 407 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 SLCO1A2P46721 670 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 EPHA5P54756 1037 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 CDH4P55283 916 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 DMTNQ08495 405 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 SLC5A9Q2M3M2 681 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 GPR158Q5T848 1215 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 ITPRIPL1Q6GPH6 555 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 OR52K2Q8NGK3 314 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 EPS8L3Q8TE67 593 aaKnown RBP21.73■■□□□ 1.07
CLN3-209ENST00000561689 GDPD5Q8WTR4 605 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 IL12RB2Q99665 862 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 GDF15Q99988 308 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 FRMD8Q9BZ67 464 aaPredicted RBP21.73■■□□□ 1.07
CLN3-209ENST00000561689 TMBIM4Q9HC24 238 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 PIH1D1Q9NWS0 290 aaKnown RBP21.73■■□□□ 1.07
CLN3-209ENST00000561689 VPS18Q9P253 973 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 TRANK1O15050 2925 aa21.73■■□□□ 1.07
CLN3-209ENST00000561689 A0A0D9SEW6 157 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 GOLGA8KD6RF30 607 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 MOSPD3O75425 235 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms