RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 HS3ST4Q9Y661 456 aa14.48□□□□□ -0.09
TPM1-223ENST00000560445 NYNRINQ9P2P1 1898 aaKnown RBP14.47□□□□□ -0.09
TPM1-223ENST00000560445 A0A1B0GVT2 93 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 A0A1W2PP55 124 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 A0A1W2PPC4 97 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 ANKRD62A6NC57 917 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 FAM47DPA6NHR8 397 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 MID1O15344 667 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 ATP9BO43861 1147 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 PROS1P07225 676 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 CDK11BP21127 795 aaKnown RBP14.47□□□□□ -0.09
TPM1-223ENST00000560445 MZF1P28698 734 aaPredicted RBP14.47□□□□□ -0.09
TPM1-223ENST00000560445 RECQLP46063 649 aaPredicted RBP14.47□□□□□ -0.09
TPM1-223ENST00000560445 PITX1P78337 314 aaPredicted RBP14.47□□□□□ -0.09
TPM1-223ENST00000560445 KCNMA1Q12791 1236 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 CXorf57Q6NSI4 855 aaKnown RBP14.47□□□□□ -0.09
TPM1-223ENST00000560445 RETSATQ6NUM9 610 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 RBM43Q6ZSC3 357 aaKnown RBP14.47□□□□□ -0.09
TPM1-223ENST00000560445 GLRX5Q86SX6 157 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 XYLT1Q86Y38 959 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 DCAF4L2Q8NA75 395 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 NEK11Q8NG66 645 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 C1orf216Q8TAB5 229 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 EPS8L1Q8TE68 723 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 SETD7Q8WTS6 366 aaKnown RBP14.47□□□□□ -0.09
TPM1-223ENST00000560445 MYEOVQ96EZ4 313 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 RPL10LQ96L21 214 aaKnown RBP14.47□□□□□ -0.09
TPM1-223ENST00000560445 DYRK4Q9NR20 520 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 PIGVQ9NUD9 493 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 SLCO3A1Q9UIG8 710 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 AJAP1Q9UKB5 411 aaPredicted RBP14.47□□□□□ -0.09
TPM1-223ENST00000560445 ANKRD6Q9Y2G4 727 aa14.47□□□□□ -0.09
TPM1-223ENST00000560445 CXorf51AA0A1B0GTR3 108 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 SPAARA0A1B0GVQ0 90 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 VILLO15195 856 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 SH3BP5O60239 455 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 PCDHGA12O60330 932 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 PNMA6AP0CW24 399 aaPredicted RBP14.46□□□□□ -0.09
TPM1-223ENST00000560445 SDC4P31431 198 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 SOX5P35711 763 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 CTSOP43234 321 aaPredicted RBP14.46□□□□□ -0.09
TPM1-223ENST00000560445 GRK6P43250 576 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 NSFP46459 744 aaKnown RBP14.46□□□□□ -0.09
TPM1-223ENST00000560445 ARRB1P49407 418 aaPredicted RBP14.46□□□□□ -0.09
TPM1-223ENST00000560445 CSNK1EP49674 416 aaKnown RBP14.46□□□□□ -0.09
TPM1-223ENST00000560445 GALCP54803 685 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 GEMIN4P57678 1058 aaKnown RBP14.46□□□□□ -0.09
TPM1-223ENST00000560445 POLR2FP61218 127 aaKnown RBP14.46□□□□□ -0.09
TPM1-223ENST00000560445 NOMO3P69849 1222 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 CENPCQ03188 943 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 SLC20A2Q08357 652 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 KRT31Q15323 416 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 TAF3Q5VWG9 929 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 NAA35Q5VZE5 725 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 NCEH1Q6PIU2 408 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 PRPF39Q86UA1 669 aaKnown RBP14.46□□□□□ -0.09
TPM1-223ENST00000560445 STK40Q8N2I9 435 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 OR14C36Q8NHC7 312 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 PPP1R16AQ96I34 528 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 SCNM1Q9BWG6 230 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 VPS16Q9H269 839 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 NEUROG2Q9H2A3 272 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 AASDHPPTQ9NRN7 309 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 FAM207AQ9NSI2 230 aaPredicted RBP14.46□□□□□ -0.09
TPM1-223ENST00000560445 DMTF1Q9Y222 760 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 HS3ST2Q9Y278 367 aa14.46□□□□□ -0.09
TPM1-223ENST00000560445 GOLGA8SH3BPF8 625 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 MCF2LO15068 1137 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 PRNPP04156 253 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 CALB1P05937 261 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 OR1E1P30953 314 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 STK19P49842 368 aaPredicted RBP14.45□□□□□ -0.1
TPM1-223ENST00000560445 ADPRHP54922 357 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 OVGP1Q12889 678 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 DLG2Q15700 870 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 CCDC183Q5T5S1 534 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 NOP9Q86U38 636 aaKnown RBP14.45□□□□□ -0.1
TPM1-223ENST00000560445 ZSCAN30Q86W11 494 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 CIR1Q86X95 450 aaPredicted RBP14.45□□□□□ -0.1
TPM1-223ENST00000560445 SH2D3CQ8N5H7 860 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 ATP11CQ8NB49 1132 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 OR2I1PQ8NGU4 316 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 PTPRN2Q92932 1015 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 FAM129BQ96TA1 746 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 TBCBQ99426 244 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 ZYG11BQ9C0D3 744 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 GANQ9H2C0 597 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 PREBQ9HCU5 417 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 GDF3Q9NR23 364 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 NOCTQ9UK39 431 aaKnown RBP14.45□□□□□ -0.1
TPM1-223ENST00000560445 PCOLCE2Q9UKZ9 415 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 MSRB2Q9Y3D2 182 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 NUMA1Q14980 2115 aa14.45□□□□□ -0.1
TPM1-223ENST00000560445 IGLV3-10A0A075B6K4 115 aa14.44□□□□□ -0.1
TPM1-223ENST00000560445 TBC1D3DA0A087WVF3 549 aa14.44□□□□□ -0.1
TPM1-223ENST00000560445 TBC1D3IA0A087WXS9 549 aa14.44□□□□□ -0.1
TPM1-223ENST00000560445 TBC1D3EA0A087X179 549 aa14.44□□□□□ -0.1
TPM1-223ENST00000560445 TBC1D3KA0A087X1G2 549 aa14.44□□□□□ -0.1
TPM1-223ENST00000560445 ILVBLA1L0T0 632 aa14.44□□□□□ -0.1
TPM1-223ENST00000560445 TBC1D3FA6NER0 549 aaPredicted RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms