RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 DNAI1Q9UI46 699 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 SLC25A13Q9UJS0 675 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 GGA2Q9UJY4 613 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 VPS28Q9UK41 221 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 PLA2G4CQ9UP65 541 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 PIEZO1Q92508 2521 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 hCG_1818297A0A087WSY0 165 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 KANSL1LA0AUZ9 987 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 RASA4BC9J798 803 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 CES2O00748 559 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 DCLK1O15075 740 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 RASA4O43374 803 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 CST8O60676 142 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 ATG13O75143 517 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 SRPRAP08240 638 aaKnown RBP9.46□□□□□ -0.9
LDLR-210ENST00000559340 CD48P09326 243 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 IL4RP24394 825 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 DEKP35659 375 aaKnown RBP9.46□□□□□ -0.9
LDLR-210ENST00000559340 MAGEA9P43362 315 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 SOX9P48436 509 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 ST8SIA6P61647 398 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 MRPS21P82921 87 aaKnown RBP9.46□□□□□ -0.9
LDLR-210ENST00000559340 MMRN1Q13201 1228 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 PDK1Q15118 436 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 PON2Q15165 354 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 GAB4Q2WGN9 574 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 PLEKHG6Q3KR16 790 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 HSF5Q4G112 596 aaPredicted RBP9.46□□□□□ -0.9
LDLR-210ENST00000559340 TMEM196Q5HYL7 178 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 KAZNQ674X7 775 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 MBLAC2Q68D91 279 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 SLC9A4Q6AI14 798 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 CXorf57Q6NSI4 855 aaKnown RBP9.46□□□□□ -0.9
LDLR-210ENST00000559340 TIGD7Q6NT04 549 aaPredicted RBP9.46□□□□□ -0.9
LDLR-210ENST00000559340 KIAA0907Q7Z7F0 614 aaPredicted RBP9.46□□□□□ -0.9
LDLR-210ENST00000559340 ALYREFQ86V81 257 aaKnown RBP9.46□□□□□ -0.9
LDLR-210ENST00000559340 CIR1Q86X95 450 aaPredicted RBP9.46□□□□□ -0.9
LDLR-210ENST00000559340 SIX5Q8N196 739 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 BBS5Q8N3I7 341 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 TERB1Q8NA31 727 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 PCDH19Q8TAB3 1148 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 CASKIN2Q8WXE0 1202 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 P3H4Q92791 437 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 TTC17Q96AE7 1141 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 HAUS1Q96CS2 278 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 MYEOVQ96EZ4 313 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 SPON2Q9BUD6 331 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 TLR10Q9BXR5 811 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 FRMD8P1Q9BZ68 369 aaPredicted RBP9.46□□□□□ -0.9
LDLR-210ENST00000559340 ATP13A1Q9HD20 1204 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 HOMER3Q9NSC5 361 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 ELOVL2Q9NXB9 296 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 RNF14Q9UBS8 474 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 PACSIN2Q9UNF0 486 aaPredicted RBP9.46□□□□□ -0.9
LDLR-210ENST00000559340 STARD13Q9Y3M8 1113 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 MUC6Q6W4X9 2439 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 ANKRD36A6QL64 1941 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 TECTAO75443 2155 aa9.46□□□□□ -0.9
LDLR-210ENST00000559340 NYNRINQ9P2P1 1898 aaKnown RBP9.45□□□□□ -0.9
LDLR-210ENST00000559340 C3orf70A6NLC5 250 aaPredicted RBP9.45□□□□□ -0.9
LDLR-210ENST00000559340 APOC4-APOC2K7ER74 178 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 ENC1O14682 589 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 PPP1R12AO14974 1030 aaPredicted RBP9.45□□□□□ -0.9
LDLR-210ENST00000559340 ZBTB24O43167 697 aaPredicted RBP9.45□□□□□ -0.9
LDLR-210ENST00000559340 KDELR3O43731 214 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 CEP104O60308 925 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 APOC2P02655 101 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 PYGMP11217 842 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 HLA-FP30511 346 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 CD70P32970 193 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 CSKP41240 450 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 MARCKSL1P49006 195 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 VASPP50552 380 aaPredicted RBP9.45□□□□□ -0.9
LDLR-210ENST00000559340 ECT2LQ008S8 904 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 KDSRQ06136 332 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 ZNF33AQ06730 810 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 TUBB2AQ13885 445 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 UBXN2BQ14CS0 331 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 FSCBQ5H9T9 825 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 PITRM1Q5JRX3 1037 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 TRIM67Q6ZTA4 783 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 BBS12Q6ZW61 710 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 C12orf40Q86WS4 652 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 DCAF4L2Q8NA75 395 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 KDM1BQ8NB78 822 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 ALG3Q92685 438 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 ARHGEF2Q92974 986 aaKnown RBP9.45□□□□□ -0.9
LDLR-210ENST00000559340 CHFRQ96EP1 664 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 IER2Q9BTL4 223 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 TUBB2BQ9BVA1 445 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 ACE2Q9BYF1 805 aaPredicted RBP9.45□□□□□ -0.9
LDLR-210ENST00000559340 CIPCQ9C0C6 399 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 SP110Q9HB58 689 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 LTB4R2Q9NPC1 389 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 ZNF212Q9UDV6 495 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 SUN2Q9UH99 717 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 SAR1BQ9Y6B6 198 aa9.45□□□□□ -0.9
LDLR-210ENST00000559340 FAM170BA6NMN3 283 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 HACD1B0YJ81 288 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 CBX4O00257 560 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms