RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	CMAS	Q8NFW8	434 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS13C-208	ENST00000559119	BICD2	Q8TD16	824 aa		4.98	□□□□□ -1.61
VPS13C-208	ENST00000559119	BRI3BP	Q8WY22	251 aa		4.98	□□□□□ -1.61
VPS13C-208	ENST00000559119	NFU1	Q9UMS0	254 aa		4.98	□□□□□ -1.61
VPS13C-208	ENST00000559119	MAGED2	Q9UNF1	606 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS13C-208	ENST00000559119	DTX4	Q9Y2E6	619 aa		4.98	□□□□□ -1.61
VPS13C-208	ENST00000559119	TRBV5-7	A0A0A0MS05	114 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	PLSCR5	A0PG75	271 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	STMND1	H3BQB6	276 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	PCDH17	O14917	1159 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	DDN	O94850	711 aa	Predicted RBP	4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	EEF1G	P26641	437 aa	Known RBP	4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	POU3F1	Q03052	451 aa	Predicted RBP	4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	PLCB4	Q15147	1175 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	SLC35G1	Q2M3R5	365 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	FAM209B	Q5JX69	171 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	ZNF569	Q5MCW4	686 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	C8orf82	Q6P1X6	216 aa	Predicted RBP	4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	H1FNT	Q75WM6	255 aa	Predicted RBP	4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	FJX1	Q86VR8	437 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	LRRC57	Q8N9N7	239 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	OR14A16	Q8NHC5	309 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	APOLD1	Q96LR9	279 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	C1QTNF4	Q9BXJ3	329 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	TMEM120A	Q9BXJ8	343 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	RETREG1	Q9H6L5	497 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	SLC52A1	Q9NWF4	448 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	KCNG2	Q9UJ96	466 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	SCN5A	Q14524	2016 aa		4.97	□□□□□ -1.61
VPS13C-208	ENST00000559119	HNRNPDL	O14979	420 aa	Known RBP	4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	RPP40	O75818	363 aa	Known RBP	4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	ALDH18A1	P54886	795 aa	Known RBP	4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	TMPRSS3	P57727	454 aa		4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	RBM6	P78332	1123 aa	Known RBP	4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	EEF1A2	Q05639	463 aa	Known RBP	4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	HLF	Q16534	295 aa		4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	COBLL1	Q53SF7	1204 aa		4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	FAM76B	Q5HYJ3	339 aa		4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	RINT1	Q6NUQ1	792 aa		4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	ANKS1B	Q7Z6G8	1248 aa		4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	CLIP4	Q8N3C7	705 aa		4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	ACTR5	Q9H9F9	607 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	ARL15	Q9NXU5	204 aa		4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	ZBTB1	Q9Y2K1	713 aa		4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	RAP2C	Q9Y3L5	183 aa		4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	COPG1	Q9Y678	874 aa	Known RBP	4.96	□□□□□ -1.62
VPS13C-208	ENST00000559119	ASAP2	O43150	1006 aa		4.95	□□□□□ -1.62
VPS13C-208	ENST00000559119	FGF18	O76093	207 aa		4.95	□□□□□ -1.62
VPS13C-208	ENST00000559119	PLG	P00747	810 aa	Predicted RBP	4.95	□□□□□ -1.62
VPS13C-208	ENST00000559119	TNFSF4	P23510	183 aa		4.95	□□□□□ -1.62
VPS13C-208	ENST00000559119	AKT1	P31749	480 aa		4.95	□□□□□ -1.62
VPS13C-208	ENST00000559119	RHAG	Q02094	409 aa		4.95	□□□□□ -1.62
VPS13C-208	ENST00000559119	RNASEL	Q05823	741 aa	Known RBP	4.95	□□□□□ -1.62
VPS13C-208	ENST00000559119	RAB30	Q15771	203 aa		4.95	□□□□□ -1.62
VPS13C-208	ENST00000559119	ZNF718	Q3SXZ3	478 aa		4.95	□□□□□ -1.62
VPS13C-208	ENST00000559119	DPP9	Q86TI2	863 aa		4.95	□□□□□ -1.62
VPS13C-208	ENST00000559119	TMEM217	Q8N7C4	229 aa		4.95	□□□□□ -1.62
VPS13C-208	ENST00000559119	DUX5	Q96PT3	197 aa		4.95	□□□□□ -1.62
VPS13C-208	ENST00000559119	TM7SF3	Q9NS93	570 aa		4.95	□□□□□ -1.62
VPS13C-208	ENST00000559119	SLC16A5	O15375	505 aa		4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	NCK2	O43639	380 aa		4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	SOCS5	O75159	536 aa		4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	KRT10	P13645	584 aa		4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	AVPR1A	P37288	418 aa		4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	HILS1	P60008	231 aa		4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	SLC39A14	Q15043	492 aa		4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	SAFB	Q15424	915 aa	Known RBP eCLIP	4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	ZNF672	Q499Z4	452 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	TMEM200A	Q86VY9	491 aa		4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	TMED6	Q8WW62	240 aa		4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	ZNF333	Q96JL9	665 aa		4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	SORBS1	Q9BX66	1292 aa	Known RBP	4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	IL36RN	Q9UBH0	155 aa		4.94	□□□□□ -1.62
VPS13C-208	ENST00000559119	LOC102724159	A0A0B4J2E5	919 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	KIF28P	B7ZC32	967 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	KLRK1	P26718	216 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	CYP2J2	P51589	502 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	NUDT6	P53370	316 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	FAM3B	P58499	235 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	ZBTB16	Q05516	673 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	PWP2	Q15269	919 aa	Known RBP	4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	KIF19	Q2TAC6	998 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	HEPHL1	Q6MZM0	1159 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	TMEM71	Q6P5X7	295 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	SLC30A9	Q6PML9	568 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	PALB2	Q86YC2	1186 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	NRSN1	Q8IZ57	195 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	HORMAD2	Q8N7B1	307 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	FAM110D	Q8TAY7	271 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	CLEC4C	Q8WTT0	213 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	FAM216A	Q8WUB2	273 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	INPP4A	Q96PE3	977 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	FRMD8	Q9BZ67	464 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	HIPK3	Q9H422	1215 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	KLHL31	Q9H511	634 aa		4.93	□□□□□ -1.62
VPS13C-208	ENST00000559119	TCRBV7S3A2	A0A539	114 aa		4.92	□□□□□ -1.62
VPS13C-208	ENST00000559119	SRRM3	A6NNA2	597 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS13C-208	ENST00000559119	KCNJ13	O60928	360 aa		4.92	□□□□□ -1.62
VPS13C-208	ENST00000559119	NPPB	P16860	134 aa		4.92	□□□□□ -1.62

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