RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 FBXO6Q9NRD1 293 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 ARL8BQ9NVJ2 186 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 STOML1Q9UBI4 398 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 TAGLN3Q9UI15 199 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 ST3GAL5Q9UNP4 418 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 L3MBTL1Q9Y468 752 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 TRPM7Q96QT4 1865 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 PATJQ8NI35 1801 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 CCDC195A0A1B0GUA6 201 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 YJEFN3A6XGL0 299 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 SPECC1L-ADORA2AF8WAN1 911 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 GSC2O15499 205 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 MAGEC1O60732 1142 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 CIB2O75838 187 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 KLHL2O95198 593 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 ALDOAP04075 364 aaKnown RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 CYP11A1P05108 521 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 CYP2B6P20813 491 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 DNAJB1P25685 340 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 TYK2P29597 1187 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 NDUFV1P49821 464 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 HK2P52789 917 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 LIMK2P53671 638 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 PRKAA2P54646 552 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 PITX1P78337 314 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 PDE1CQ14123 709 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 CRTC2Q53ET0 693 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 BRMS1LQ5PSV4 323 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 N4BP2L1Q5TBK1 243 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 KIAA0319Q5VV43 1072 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 BSPRYQ5W0U4 402 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 MBLAC2Q68D91 279 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 C4orf50Q6ZRC1 276 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 HFE2Q6ZVN8 426 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 MRPL10Q7Z7H8 261 aaKnown RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 TMEM135Q86UB9 458 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 CCDC33Q8N5R6 958 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 LZTR1Q8N653 840 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 TEX9Q8N6V9 391 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 DNAAF3Q8N9W5 541 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 PIWIL2Q8TC59 973 aaKnown RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 NDRG1Q92597 394 aaKnown RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 STMN2Q93045 179 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 MYLPFQ96A32 169 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 ZNF669Q96BR6 464 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 ZFP42Q96MM3 310 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 TSNARE1Q96NA8 513 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 KCNK17Q96T54 332 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 GAD1Q99259 594 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 ACBD6Q9BR61 282 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 COLEC11Q9BWP8 271 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 CADM1Q9BY67 442 aaKnown RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 MAGEB5Q9BZ81 275 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 NMUR2Q9GZQ4 415 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 SENP6Q9GZR1 1112 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 WDCPQ9H6R7 721 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 DMAP1Q9NPF5 467 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 RNF19AQ9NV58 838 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 PPARGC1AQ9UBK2 798 aaKnown RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 VPS9D1Q9Y2B5 631 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 ANKRD6Q9Y2G4 727 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 AAR2Q9Y312 384 aaKnown RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 SCN10AQ9Y5Y9 1956 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 ARL5CA6NH57 179 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 CAPN14A8MX76 684 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 TMEM114B3SHH9 223 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 HHLA1C9JL84 531 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 TNPO2O14787 897 aaKnown RBP7.42□□□□□ -1.22
VPS13C-206ENST00000558338 LIN7AO14910 233 aaPredicted RBP7.42□□□□□ -1.22
VPS13C-206ENST00000558338 FGF10O15520 208 aaPredicted RBP7.42□□□□□ -1.22
VPS13C-206ENST00000558338 DIAPH2O60879 1101 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 IGHA2P01877 340 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 PROCP04070 461 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 S100BP04271 92 aaPredicted RBP7.42□□□□□ -1.22
VPS13C-206ENST00000558338 FYNP06241 537 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 C6orf222P0C671 652 aaPredicted RBP7.42□□□□□ -1.22
VPS13C-206ENST00000558338 USP17L7P0C7H9 530 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 TPBGLP0DKB5 382 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 FGF3P11487 239 aaPredicted RBP7.42□□□□□ -1.22
VPS13C-206ENST00000558338 GNAZP19086 355 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 SLC1A6P48664 564 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 POLD2P49005 469 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 CLCNKBP51801 687 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 RAP1GDS1P52306 607 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 AQP5P55064 265 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 TSPY1Q01534 308 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 CDH17Q12864 832 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 GRIK3Q13003 919 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 CCL14Q16627 93 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 UPP1Q16831 310 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 UGP2Q16851 508 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 KCTD11Q693B1 232 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 PM20D1Q6GTS8 502 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 C11orf96Q7Z7L8 435 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 RASAL3Q86YV0 1011 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 CCDC117Q8IWD4 279 aaPredicted RBP7.42□□□□□ -1.22
VPS13C-206ENST00000558338 KLHDC8BQ8IXV7 354 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 THEM5Q8N1Q8 247 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 ZMIZ2Q8NF64 920 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms