RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 RETSATQ6NUM9 610 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 C8orf74Q6P047 294 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 VITQ6UXI7 678 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 TFAP2DQ7Z6R9 452 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 ZNF354CQ86Y25 554 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 CCDC13Q8IYE1 715 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 CARNMT1Q8N4J0 409 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 BBOF1Q8ND07 529 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 CSGALNACT1Q8TDX6 532 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 WFIKKN2Q8TEU8 576 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 C1orf54Q8WWF1 131 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 UBXN4Q92575 508 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 ACDQ96AP0 544 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 PRICKLE1Q96MT3 831 aaPredicted RBP12.71□□□□□ -0.37
TPM1-209ENST00000558072 OLFM3Q96PB7 478 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 FAM83CQ9BQN1 747 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 MUC3BQ9H195 1237 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 RBM12Q9NTZ6 932 aaKnown RBP12.71□□□□□ -0.37
TPM1-209ENST00000558072 PRKAG3Q9UGI9 489 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 TRHDEQ9UKU6 1024 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 NEU3Q9UQ49 428 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 UTP11Q9Y3A2 253 aaKnown RBP12.71□□□□□ -0.37
TPM1-209ENST00000558072 WNT6Q9Y6F9 365 aa12.71□□□□□ -0.37
TPM1-209ENST00000558072 PRUNE2Q8WUY3 3088 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 XIRP2A4UGR9 3374 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 GOLGA6CA6NDK9 693 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 GOLGA6BA6NDN3 693 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 RASA4BC9J798 803 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 NEDD8-MDP1E9PL57 170 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 SGK1O00141 431 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 SMAPO00193 183 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 DFFAO00273 331 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 RASA4O43374 803 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 TIMM44O43615 452 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 MFSD11O43934 449 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 CNTN5O94779 1100 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 GOLGA6DP0CG33 693 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 TYRP14679 529 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 IRAK1P51617 712 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 SGSHP51688 502 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 PLK1P53350 603 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 GBE1Q04446 702 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 IL10RBQ08334 325 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 AP1B1Q10567 949 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 RUNX3Q13761 415 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 LLGL1Q15334 1064 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 PPP1R7Q15435 360 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 ITPRIPL2Q3MIP1 535 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 ALFQ53S48 1182 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 LY6G5CQ5SRR4 150 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 FYB2Q5VWT5 728 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 IL31Q6EBC2 164 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 TPGS1Q6ZTW0 290 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 ANKS1BQ7Z6G8 1248 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 KLHL7Q8IXQ5 586 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 CFAP52Q8N1V2 620 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 TTC8Q8TAM2 541 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 QKIQ96PU8 341 aaKnown RBP eCLIP12.7□□□□□ -0.381e-8■■■■■ 42
TPM1-209ENST00000558072 KRT12Q99456 494 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 FAM129AQ9BZQ8 928 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 BRD9Q9H8M2 597 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 ECT2Q9H8V3 914 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 SP110Q9HB58 689 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 GOLGA6AQ9NYA3 693 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 IPO11Q9UI26 975 aaKnown RBP12.7□□□□□ -0.38
TPM1-209ENST00000558072 DNPEPQ9ULA0 475 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 SLC8A2Q9UPR5 921 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 NUMBLQ9Y6R0 609 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 COL4A2P08572 1712 aa12.7□□□□□ -0.38
TPM1-209ENST00000558072 SPTBN5Q9NRC6 3674 aaKnown RBP12.7□□□□□ -0.38
TPM1-209ENST00000558072 TCRBV7S2A1N4TA0A589 114 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 RIOK3O14730 519 aaKnown RBP12.69□□□□□ -0.38
TPM1-209ENST00000558072 MATN3O15232 486 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 KDELR3O43731 214 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 CACNG3O60359 315 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 OPHN1O60890 802 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 GLULP15104 373 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 ARSAP15289 507 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 PECAM1P16284 738 aaPredicted RBP12.69□□□□□ -0.38
TPM1-209ENST00000558072 CES1P23141 567 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 HOXD9P28356 352 aaPredicted RBP12.69□□□□□ -0.38
TPM1-209ENST00000558072 HSPA9P38646 679 aaKnown RBP12.69□□□□□ -0.38
TPM1-209ENST00000558072 NNMTP40261 264 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 NUMBP49757 651 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 PAPOLAP51003 745 aaKnown RBP12.69□□□□□ -0.38
TPM1-209ENST00000558072 ADCY2Q08462 1091 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 C2orf54Q08AI8 447 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 SERINC3Q13530 473 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 HTR4Q13639 388 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 HNRNPDQ14103 355 aaKnown RBP12.69□□□□□ -0.38
TPM1-209ENST00000558072 PRKD1Q15139 912 aaPredicted RBP12.69□□□□□ -0.38
TPM1-209ENST00000558072 OASLQ15646 514 aaKnown RBP12.69□□□□□ -0.38
TPM1-209ENST00000558072 P3H1Q32P28 736 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 ITPRIPL1Q6GPH6 555 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 RHBDF2Q6PJF5 856 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 PCGF5Q86SE9 256 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 ZC3H18Q86VM9 953 aaKnown RBP12.69□□□□□ -0.38
TPM1-209ENST00000558072 CIR1Q86X95 450 aaPredicted RBP12.69□□□□□ -0.38
TPM1-209ENST00000558072 TMEM25Q86YD3 366 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 AHI1Q8N157 1196 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms