RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SLC25A52Q3SY17 297 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 KLC3Q6P597 504 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 NAPRTQ6XQN6 538 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 RBM44Q6ZP01 1051 aaKnown RBP16.6■□□□□ 0.25
SHMT2-231ENST00000557433 CMC1Q7Z7K0 106 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 ZNF567Q8N184 647 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 LINC01465Q8N7H1 131 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 RNF139Q8WU17 664 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 TRAPPC12Q8WVT3 735 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 KBTBD7Q8WVZ9 684 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 TOP1MTQ969P6 601 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 MRPL45Q9BRJ2 306 aaKnown RBP16.6■□□□□ 0.25
SHMT2-231ENST00000557433 GATA5Q9BWX5 397 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-231ENST00000557433 B3GNT5Q9BYG0 378 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 SPATC1LQ9H0A9 340 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 RBM38Q9H0Z9 239 aaKnown RBP16.6■□□□□ 0.25
SHMT2-231ENST00000557433 CLIC5Q9NZA1 410 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 VANGL2Q9ULK5 521 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 ZMPSTE24O75844 475 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 C2P06681 752 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 SERPINB5P36952 375 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 AIF1P55008 147 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 DPYSQ14117 519 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 FAM182AQ5T1J6 154 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 PLD6Q8N2A8 252 aaKnown RBP16.6■□□□□ 0.25
SHMT2-231ENST00000557433 MAPK15Q8TD08 544 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 PDCD6IPQ8WUM4 868 aaKnown RBP16.6■□□□□ 0.25
SHMT2-231ENST00000557433 ZNF669Q96BR6 464 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-231ENST00000557433 NMD3Q96D46 503 aaKnown RBP16.6■□□□□ 0.25
SHMT2-231ENST00000557433 OR52B2Q96RD2 323 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 CDRT15Q96T59 188 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 HAUS8Q9BT25 410 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 CASS4Q9NQ75 786 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 FAM49BQ9NUQ9 324 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 UTP6Q9NYH9 597 aaKnown RBP16.6■□□□□ 0.25
SHMT2-231ENST00000557433 EPS15L1Q9UBC2 864 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 CDYLQ9Y232 598 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 COL1A2P08123 1366 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 A0A087WZ62 844 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 DAB1O75553 588 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 PGM3O95394 542 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 SLC25A27O95847 323 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 THOP1P52888 689 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 MPP3Q13368 585 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 SOWAHAQ2M3V2 549 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 ANO4Q32M45 955 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 LSM12Q3MHD2 195 aaKnown RBP16.59■□□□□ 0.25
SHMT2-231ENST00000557433 BSPRYQ5W0U4 402 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 ZNF410Q86VK4 478 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 TNS4Q8IZW8 715 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 CRYBG2Q8N1P7 616 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 ZNF668Q96K58 619 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-231ENST00000557433 FCRL3Q96P31 734 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-231ENST00000557433 FDXACB1Q9BRP7 624 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-231ENST00000557433 MCMBPQ9BTE3 642 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 MAN1C1Q9NR34 630 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 ZNF358Q9NW07 568 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 UBAP1Q9NZ09 502 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 SNX9Q9Y5X1 595 aa16.59■□□□□ 0.25
SHMT2-231ENST00000557433 ZCWPW2A0A1B0GU75 182 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 PSMD8P48556 350 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 CSRP3P50461 194 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 ART3Q13508 389 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 PEX6Q13608 980 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 NADK2Q4G0N4 442 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 INTS6LQ5JSJ4 861 aaKnown RBP16.58■□□□□ 0.25
SHMT2-231ENST00000557433 KLHDC10Q6PID8 442 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 PID1Q7Z2X4 250 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 SAMD7Q7Z3H4 446 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 CCNYQ8ND76 341 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 CPB2Q96IY4 423 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 AGAP3Q96P47 875 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 ACE2Q9BYF1 805 aaPredicted RBP16.58■□□□□ 0.25
SHMT2-231ENST00000557433 WDR41Q9HAD4 459 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 ZBTB26Q9HCK0 441 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 TLK1Q9UKI8 766 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 TRHDEQ9UKU6 1024 aa16.58■□□□□ 0.25
SHMT2-231ENST00000557433 SOCS7O14512 581 aa16.58■□□□□ 0.24
SHMT2-231ENST00000557433 OR6B1O95007 311 aa16.58■□□□□ 0.24
SHMT2-231ENST00000557433 HSPA1AP0DMV8 641 aaKnown RBP16.58■□□□□ 0.24
SHMT2-231ENST00000557433 HSPA1BP0DMV9 641 aaKnown RBP16.58■□□□□ 0.24
SHMT2-231ENST00000557433 GMPSP49915 693 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-231ENST00000557433 ATXN1P54253 815 aaKnown RBP16.58■□□□□ 0.24
SHMT2-231ENST00000557433 MRPS22P82650 360 aaKnown RBP16.58■□□□□ 0.24
SHMT2-231ENST00000557433 ITPRIPL1Q6GPH6 555 aa16.58■□□□□ 0.24
SHMT2-231ENST00000557433 EEPD1Q7L9B9 569 aa16.58■□□□□ 0.24
SHMT2-231ENST00000557433 TMEM130Q8N3G9 435 aa16.58■□□□□ 0.24
SHMT2-231ENST00000557433 BEST2Q8NFU1 509 aa16.58■□□□□ 0.24
SHMT2-231ENST00000557433 RIN3Q8TB24 985 aa16.58■□□□□ 0.24
SHMT2-231ENST00000557433 TRPC4APQ8TEL6 797 aa16.58■□□□□ 0.24
SHMT2-231ENST00000557433 SLC9A7Q96T83 725 aa16.58■□□□□ 0.24
SHMT2-231ENST00000557433 VAT1Q99536 393 aa16.58■□□□□ 0.24
SHMT2-231ENST00000557433 GPR22Q99680 433 aa16.58■□□□□ 0.24
SHMT2-231ENST00000557433 OXCT2Q9BYC2 517 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-231ENST00000557433 PRDM12Q9H4Q4 367 aa16.58■□□□□ 0.24
SHMT2-231ENST00000557433 KLHL8Q9P2G9 620 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-231ENST00000557433 GNEQ9Y223 722 aaKnown RBP16.58■□□□□ 0.24
SHMT2-231ENST00000557433 WDR90Q96KV7 1748 aa16.58■□□□□ 0.24
SHMT2-231ENST00000557433 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-231ENST00000557433 TRPC5OSA6NMA1 111 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms