RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TMEM169Q96HH4 297 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 NAF1Q96HR8 494 aaKnown RBP12.94□□□□□ -0.34
SHMT2-229ENST00000557348 PAFAH2Q99487 392 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 TUBB6Q9BUF5 446 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 HERC2P3Q9BVR0 1158 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 VCXQ9H320 206 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 ECT2Q9H8V3 914 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 SEPT10Q9P0V9 454 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 KLHL14Q9P2G3 628 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 MFHAS1Q9Y4C4 1052 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 CDY1Q9Y6F8 540 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 TCRBV9S1A1TA0A576 114 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 FAM47DPA6NHR8 397 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 AP2A1O95782 977 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 TIMP1P01033 207 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 ZDHHC11BP0C7U3 371 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 CSH1P0DML2 217 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 CSH2P0DML3 217 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SRGAP2BP0DMP2 458 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 RHOQP17081 205 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 PRKCHP24723 683 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SSTR1P30872 391 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 NDST2P52849 883 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 NRLP54845 237 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 GAD2Q05329 585 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 TSNAXIP1Q2TAA8 658 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 ACCSLQ4AC99 568 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SNX30Q5VWJ9 437 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 KLHDC10Q6PID8 442 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 RNF19BQ6ZMZ0 732 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 LRRC6Q86X45 466 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SRRM1Q8IYB3 904 aaKnown RBP12.93□□□□□ -0.34
SHMT2-229ENST00000557348 TMEM199Q8N511 208 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 ENDOVQ8N8Q3 282 aaKnown RBP12.93□□□□□ -0.34
SHMT2-229ENST00000557348 RTL3Q8N8U3 475 aaKnown RBP12.93□□□□□ -0.34
SHMT2-229ENST00000557348 STKLD1Q8NE28 680 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 DYDC1Q8WWB3 177 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 CDKL2Q92772 493 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 ZNF689Q96CS4 500 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-229ENST00000557348 ELAC2Q9BQ52 826 aaKnown RBP12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SIK2Q9H0K1 926 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 CWH43Q9H720 699 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 LRRC40Q9H9A6 602 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 MARCH2Q9P0N8 246 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 PRKAG3Q9UGI9 489 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SFMBT1Q9UHJ3 866 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SSX2IPQ9Y2D8 614 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 AAR2Q9Y312 384 aaKnown RBP12.93□□□□□ -0.34
SHMT2-229ENST00000557348 MAGEB16A2A368 324 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 CCDC85CA6NKD9 419 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SLC38A8A6NNN8 435 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 E9PAM4 449 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 KIAA0355O15063 1070 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 FAM155BO75949 473 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 KRT37O76014 449 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 UPP2O95045 317 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 UNC5CO95185 931 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 ACADSP16219 412 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 CNTFP26441 200 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 GCAP28676 217 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SERPINB9P50453 376 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 TUBP50607 506 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 DSG1Q02413 1049 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 TAF10Q12962 218 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 C10orf120Q5SQS8 335 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SPOUT1Q5T280 376 aaKnown RBP12.93□□□□□ -0.34
SHMT2-229ENST00000557348 FAXCQ5TGI0 409 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 STEAP4Q687X5 459 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 NAPEPLDQ6IQ20 393 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SPATA21Q7Z572 469 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SLC26A11Q86WA9 606 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 NPWQ8N729 165 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 MICAL1Q8TDZ2 1067 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SLC44A1Q8WWI5 657 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 CKAP2Q8WWK9 683 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 MTBPQ96DY7 904 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 THOC1Q96FV9 657 aaKnown RBP12.93□□□□□ -0.34
SHMT2-229ENST00000557348 SIGLEC10Q96LC7 697 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 TEKT5Q96M29 485 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 ZNF570Q96NI8 536 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 WDR83Q9BRX9 315 aaKnown RBP12.93□□□□□ -0.34
SHMT2-229ENST00000557348 ZYG11BQ9C0D3 744 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 TRABDQ9H4I3 376 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 KCNK9Q9NPC2 374 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.93□□□□□ -0.34
SHMT2-229ENST00000557348 TBK1Q9UHD2 729 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 NEU3Q9UQ49 428 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 PCDHA11Q9Y5I1 949 aa12.93□□□□□ -0.34
SHMT2-229ENST00000557348 IGLV3-10A0A075B6K4 115 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 WDR27A2RRH5 827 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 NT5C1B-RDH14C9J2C7 533 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 TRAFD1O14545 582 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-229ENST00000557348 MSI1O43347 362 aaKnown RBP12.92□□□□□ -0.34
SHMT2-229ENST00000557348 DIAPH2O60879 1101 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 BANF1O75531 89 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 KRT38O76015 456 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 ANXA9O76027 345 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 UBOX5O94941 541 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 IGLV3-27P01718 113 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 URODP06132 367 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms