RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SLC9A4Q6AI14 798 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 TMCO3Q6UWJ1 677 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 NPNTQ6UXI9 565 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 ARHGAP36Q6ZRI8 547 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 VSIG1Q86XK7 387 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 RFX6Q8HWS3 928 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 CCDC117Q8IWD4 279 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-227ENST00000557269 AHI1Q8N157 1196 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 CYB5D2Q8WUJ1 264 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 LRRN4Q8WUT4 740 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 ARHGEF2Q92974 986 aaKnown RBP13.14□□□□□ -0.31
SHMT2-227ENST00000557269 HMCESQ96FZ2 354 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 RBM41Q96IZ5 413 aaKnown RBP13.14□□□□□ -0.31
SHMT2-227ENST00000557269 SPON2Q9BUD6 331 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 ACE2Q9BYF1 805 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-227ENST00000557269 SAE1Q9UBE0 346 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-227ENST00000557269 JRKLQ9Y4A0 524 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 ACTL7AQ9Y615 435 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 TRIOO75962 3097 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 TCRBV7S2A1N4TA0A589 114 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 TMEM221A6NGB7 291 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 M0R296 226 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 TNFRSF10AO00220 468 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 KCNK3O14649 394 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 APOL1O14791 398 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 PI15O43692 258 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 CST8O60676 142 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 RAMP2O60895 175 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 ZMPSTE24O75844 475 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 DRD1P21728 446 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 DEKP35659 375 aaKnown RBP13.13□□□□□ -0.31
SHMT2-227ENST00000557269 TNFRSF4P43489 277 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 KIR2DL1P43626 348 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-227ENST00000557269 PAPOLAP51003 745 aaKnown RBP13.13□□□□□ -0.31
SHMT2-227ENST00000557269 NDST2P52849 883 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 COPS2P61201 443 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 POLD3Q15054 466 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-227ENST00000557269 PPP2R5EQ16537 467 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 PTPRNQ16849 979 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 ODF2Q5BJF6 829 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 EGFLAMQ63HQ2 1017 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 PKN3Q6P5Z2 889 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 C1orf228Q6PIY5 440 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 ZNF783Q6ZMS7 281 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 LEKR1Q6ZMV7 388 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 Q6ZS52 159 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 SUGP1Q8IWZ8 645 aaKnown RBP13.13□□□□□ -0.31
SHMT2-227ENST00000557269 CCDC105Q8IYK2 499 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 FLCNQ8NFG4 579 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 WFIKKN2Q8TEU8 576 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 TTC17Q96AE7 1141 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 ACOX2Q99424 681 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 MAK16Q9BXY0 300 aaKnown RBP13.13□□□□□ -0.31
SHMT2-227ENST00000557269 OSBPL8Q9BZF1 889 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 CIPCQ9C0C6 399 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 MAGEH1Q9H213 219 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 LMAN1LQ9HAT1 526 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 POLR3BQ9NW08 1133 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-227ENST00000557269 ELOVL2Q9NXB9 296 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 VPS28Q9UK41 221 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 TECTAO75443 2155 aa13.13□□□□□ -0.31
SHMT2-227ENST00000557269 BDP1A6H8Y1 2624 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 F5P12259 2224 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 CBX4O00257 560 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 DFFAO00273 331 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 STK25O00506 426 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 MT-CO1P00395 513 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 PECAM1P16284 738 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-227ENST00000557269 PTPN7P35236 360 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 TIE1P35590 1138 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 STK19P49842 368 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-227ENST00000557269 OXCT1P55809 520 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 YBEYP58557 167 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-227ENST00000557269 ARF5P84085 180 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 SERINC3Q13530 473 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 SLC12A1Q13621 1099 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 GAS6Q14393 721 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 DMC1Q14565 340 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 PARP15Q460N3 678 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 C2orf27AQ580R0 203 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 IL31Q6EBC2 164 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 LINGO4Q6UY18 593 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 NYAP1Q6ZVC0 841 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 B4GALNT4Q76KP1 1039 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 ZNF557Q8N988 423 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-227ENST00000557269 PJA1Q8NG27 643 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-227ENST00000557269 HAUS1Q96CS2 278 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 RPL10LQ96L21 214 aaKnown RBP13.12□□□□□ -0.31
SHMT2-227ENST00000557269 MRGPRX3Q96LB0 322 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 ATP13A1Q9HD20 1204 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 DTLQ9NZJ0 730 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 VPS51Q9UID3 782 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 SLCO3A1Q9UIG8 710 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 MRPS17Q9Y2R5 130 aaKnown RBP13.12□□□□□ -0.31
SHMT2-227ENST00000557269 STARD13Q9Y3M8 1113 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 A0A0C4DFX4 3053 aa13.12□□□□□ -0.31
SHMT2-227ENST00000557269 CHD5Q8TDI0 1954 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 NYNRINQ9P2P1 1898 aaKnown RBP13.11□□□□□ -0.31
SHMT2-227ENST00000557269 WASH3PC4AMC7 463 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms