RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	NECAB3	Q96P71	396 aa	Predicted RBP	12.82	□□□□□ -0.36
ABCD4-223	ENST00000555904	FEM1A	Q9BSK4	669 aa		12.82	□□□□□ -0.36
ABCD4-223	ENST00000555904	CIPC	Q9C0C6	399 aa		12.82	□□□□□ -0.36
ABCD4-223	ENST00000555904	SP110	Q9HB58	689 aa		12.82	□□□□□ -0.36
ABCD4-223	ENST00000555904	NDFIP2	Q9NV92	336 aa		12.82	□□□□□ -0.36
ABCD4-223	ENST00000555904	ETNK2	Q9NVF9	386 aa		12.82	□□□□□ -0.36
ABCD4-223	ENST00000555904	RNF14	Q9UBS8	474 aa		12.82	□□□□□ -0.36
ABCD4-223	ENST00000555904	ZNF212	Q9UDV6	495 aa		12.82	□□□□□ -0.36
ABCD4-223	ENST00000555904	FBXO10	Q9UK96	956 aa		12.82	□□□□□ -0.36
ABCD4-223	ENST00000555904	CA14	Q9ULX7	337 aa		12.82	□□□□□ -0.36
ABCD4-223	ENST00000555904	MRPS17	Q9Y2R5	130 aa	Known RBP	12.82	□□□□□ -0.36
ABCD4-223	ENST00000555904		A0A0D9SEW6	157 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	CBX4	O00257	560 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	TIMM44	O43615	452 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	ZNF189	O75820	626 aa	Predicted RBP	12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	URI1	O94763	535 aa	Predicted RBP	12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	KAT7	O95251	611 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	DRD1	P21728	446 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	OPRD1	P41143	372 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	SLC6A11	P48066	632 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	GBE1	Q04446	702 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	PLEKHG6	Q3KR16	790 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	ARTN	Q5T4W7	220 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	TIGD7	Q6NT04	549 aa	Predicted RBP	12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	RETSAT	Q6NUM9	610 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	ADAT2	Q7Z6V5	191 aa	Known RBP	12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	RASGEF1C	Q8N431	466 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	CCNY	Q8ND76	341 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	ACTRT1	Q8TDG2	376 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	COG1	Q8WTW3	980 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	ARHGEF2	Q92974	986 aa	Known RBP	12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	ACD	Q96AP0	544 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	HMCES	Q96FZ2	354 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	P2RY11	Q96G91	374 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	CAPZA3	Q96KX2	299 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	BRD8	Q9H0E9	1235 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	LRRC19	Q9H756	370 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	HOMER3	Q9NSC5	361 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	HAUS2	Q9NVX0	235 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	DTL	Q9NZJ0	730 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	SLC25A13	Q9UJS0	675 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	TTC7A	Q9ULT0	858 aa	Predicted RBP	12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	CLEC4E	Q9ULY5	219 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	SLC8A2	Q9UPR5	921 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	MFHAS1	Q9Y4C4	1052 aa		12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	SPTBN5	Q9NRC6	3674 aa	Known RBP	12.81	□□□□□ -0.36
ABCD4-223	ENST00000555904	NEBL	O76041	1014 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	ASL	P04424	464 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	CISD3	P0C7P0	127 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	PECAM1	P16284	738 aa	Predicted RBP	12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	MZF1	P28698	734 aa	Predicted RBP	12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	NNMT	P40261	264 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	GARS	P41250	739 aa	Known RBP	12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	PAPOLA	P51003	745 aa	Known RBP	12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	GALK1	P51570	392 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	PLK1	P53350	603 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	ST8SIA6	P61647	398 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	OTUD4	Q01804	1114 aa	Known RBP	12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	GALNT2	Q10471	571 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	KLF1	Q13351	362 aa	Predicted RBP	12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	SERINC3	Q13530	473 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	TUBB2A	Q13885	445 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	PON2	Q15165	354 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	GEN1	Q17RS7	908 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	FUT11	Q495W5	492 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	AFMID	Q63HM1	303 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	MBLAC2	Q68D91	279 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	SIX5	Q8N196	739 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	OR7D4	Q8NG98	312 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	OR52K2	Q8NGK3	314 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	ACTL9	Q8TC94	416 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	TFB1M	Q8WVM0	346 aa	Known RBP	12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	CHFR	Q96EP1	664 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	MS4A14	Q96JA4	679 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	TUBB2B	Q9BVA1	445 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	SLC39A8	Q9C0K1	460 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	SAE1	Q9UBE0	346 aa	Predicted RBP	12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	PLA2G4C	Q9UP65	541 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	COL4A3	Q01955	1670 aa		12.8	□□□□□ -0.36
ABCD4-223	ENST00000555904	UNC80	Q8N2C7	3258 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	HACD1	B0YJ81	288 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904		H7C0C1	242 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	STK25	O00506	426 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	KRIT1	O00522	736 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	TRIM24	O15164	1050 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	ZNF185	O15231	689 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	FANCG	O15287	622 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	MTSS1	O43312	755 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	KDELR3	O43731	214 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	STK10	O94804	968 aa	Known RBP	12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	MAP3K6	O95382	1288 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	ACVRL1	P37023	503 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	TNFRSF4	P43489	277 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	ATP5O	P48047	213 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	EIF3E	P60228	445 aa	Known RBP	12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	ECT2L	Q008S8	904 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	ZNF33A	Q06730	810 aa		12.79	□□□□□ -0.36
ABCD4-223	ENST00000555904	CKAP4	Q07065	602 aa	Known RBP	12.79	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms