RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 PECAM1P16284 738 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-220ENST00000555634 GARSP41250 739 aaKnown RBP11.47□□□□□ -0.57
SHMT2-220ENST00000555634 DGKGP49619 791 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 GBE1Q04446 702 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 SULT2A1Q06520 285 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 RUNX3Q13761 415 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 ZNF235Q14590 738 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 DHCR24Q15392 516 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 CYP1B1Q16678 543 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 GLE1Q53GS7 698 aaKnown RBP11.47□□□□□ -0.57
SHMT2-220ENST00000555634 ITPRIPL1Q6GPH6 555 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 RETSATQ6NUM9 610 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 PARM1Q6UWI2 310 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 ANKS1BQ7Z6G8 1248 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 SUGP1Q8IWZ8 645 aaKnown RBP11.47□□□□□ -0.57
SHMT2-220ENST00000555634 CCDC13Q8IYE1 715 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 ZNF683Q8IZ20 524 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 NPWQ8N729 165 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 DCAF4L2Q8NA75 395 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 ATG4AQ8WYN0 398 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 DNASE1L2Q92874 299 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 FGF14Q92915 247 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 NKD2Q969F2 451 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-220ENST00000555634 WBP2Q969T9 261 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 KRT12Q99456 494 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 VAT1Q99536 393 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 SPON2Q9BUD6 331 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 LRRC19Q9H756 370 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 ECT2Q9H8V3 914 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 RBM12Q9NTZ6 932 aaKnown RBP11.47□□□□□ -0.57
SHMT2-220ENST00000555634 DNAJC17Q9NVM6 304 aaKnown RBP11.47□□□□□ -0.57
SHMT2-220ENST00000555634 GOLGA6AQ9NYA3 693 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 SMARCAL1Q9NZC9 954 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 SEPT10Q9P0V9 454 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 TBC1D30Q9Y2I9 924 aa11.47□□□□□ -0.57
SHMT2-220ENST00000555634 UTP11Q9Y3A2 253 aaKnown RBP11.47□□□□□ -0.57
SHMT2-220ENST00000555634 COL4A2P08572 1712 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 CBX4O00257 560 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 KCNN4O15554 427 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 MCM3P25205 808 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 STIP1P31948 543 aaKnown RBP11.46□□□□□ -0.57
SHMT2-220ENST00000555634 COILP38432 576 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-220ENST00000555634 NNMTP40261 264 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 EIF2DP41214 584 aaKnown RBP11.46□□□□□ -0.57
SHMT2-220ENST00000555634 SGSHP51688 502 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 PPIDQ08752 370 aaKnown RBP11.46□□□□□ -0.57
SHMT2-220ENST00000555634 P3H1Q32P28 736 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 TEX35Q5T0J7 233 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 FYB2Q5VWT5 728 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 GRAMD4Q6IC98 578 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 NPNTQ6UXI9 565 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 ARHGEF18Q6ZSZ5 1173 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 TMEM25Q86YD3 366 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 PRELID2Q8N945 189 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 ATL2Q8NHH9 583 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 FIBINQ8TAL6 211 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 UCMAQ8WVF2 138 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 UBXN4Q92575 508 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 ACDQ96AP0 544 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 ZNF599Q96NL3 588 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 OLFM3Q96PB7 478 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 DDX47Q9H0S4 455 aaKnown RBP11.46□□□□□ -0.57
SHMT2-220ENST00000555634 RRAGDQ9NQL2 400 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-220ENST00000555634 PLK2Q9NYY3 685 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 DEC1Q9P2X7 70 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 ASIC3Q9UHC3 531 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 GGA2Q9UJY4 613 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 DNPEPQ9ULA0 475 aa11.46□□□□□ -0.57
SHMT2-220ENST00000555634 CXorf51AA0A1B0GTR3 108 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 TCRBV7S2A1N4TA0A589 114 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 BCLAF3A2AJT9 711 aaKnown RBP11.45□□□□□ -0.58
SHMT2-220ENST00000555634 FAM187AA6NFU0 413 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 RNF103O00237 685 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 OPHN1O60890 802 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 IFNB1P01574 187 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 ATP5BP06576 529 aaKnown RBP11.45□□□□□ -0.58
SHMT2-220ENST00000555634 PABPC1P11940 636 aaKnown RBP11.45□□□□□ -0.58
SHMT2-220ENST00000555634 ARSAP15289 507 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 POLR2EP19388 210 aaKnown RBP11.45□□□□□ -0.58
SHMT2-220ENST00000555634 CCNCP24863 283 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 CSKP41240 450 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 PAPOLAP51003 745 aaKnown RBP11.45□□□□□ -0.58
SHMT2-220ENST00000555634 RENBPP51606 427 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 ST8SIA6P61647 398 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 IL10RBQ08334 325 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 PRPSAP1Q14558 356 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 RFTN1Q14699 578 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-220ENST00000555634 EIF4HQ15056 248 aaKnown RBP11.45□□□□□ -0.58
SHMT2-220ENST00000555634 PRKD1Q15139 912 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-220ENST00000555634 TRIM68Q6AZZ1 485 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 ADHFE1Q8IWW8 467 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 ADGRG2Q8IZP9 1017 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 BBOF1Q8ND07 529 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 SLC35B2Q8TB61 432 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 HTR3CQ8WXA8 447 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 CASKIN2Q8WXE0 1202 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 FATE1Q969F0 183 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 RSPRY1Q96DX4 576 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 HMCESQ96FZ2 354 aa11.45□□□□□ -0.58
SHMT2-220ENST00000555634 ZFYVE19Q96K21 471 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms