RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SIK2Q9H0K1 926 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 OSBPL2Q9H1P3 480 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 AIPL1Q9NZN9 384 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 SLCO3A1Q9UIG8 710 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 TPX2Q9ULW0 747 aaKnown RBP16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 DOCK4Q8N1I0 1966 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 SPTBN2O15020 2390 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 MEI4A8MW99 385 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 ARHGAP33O14559 1287 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 CNTN5O94779 1100 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 SEMA4FO95754 770 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 ADH1BP00325 375 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 CFIP05156 583 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 SYPP08247 313 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 ADRB1P08588 477 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 ACSL1P33121 698 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 ADRA1BP35368 520 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 GGCXP38435 758 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 PRKCIP41743 596 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 STK19P49842 368 aaPredicted RBP16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 CLCN6P51797 869 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 KRT83P78385 493 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 SCAPQ12770 1279 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 ARL13BQ3SXY8 428 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 ALFQ53S48 1182 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 PPP1R15BQ5SWA1 713 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 C6orf118Q5T5N4 469 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 SH2D3CQ8N5H7 860 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 DEFB119Q8N690 84 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 EMC1Q8N766 993 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 JOSD2Q8TAC2 188 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 MTG2Q9H4K7 406 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 DNAAF2Q9NVR5 837 aaKnown RBP16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 SLC25A13Q9UJS0 675 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 VPS28Q9UK41 221 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 NCKAP1Q9Y2A7 1128 aa16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.48■□□□□ 0.23
CCDC88C-209ENST00000554872 ILVBLA1L0T0 632 aa16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 C5AR1P21730 350 aa16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 RFC1P35251 1148 aaPredicted RBP16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 HDAC4P56524 1084 aa16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 ATP11AP98196 1134 aa16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 NR1I3Q14994 352 aa16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 DCAF12L1Q5VU92 463 aa16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 ACAD10Q6JQN1 1059 aa16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 DSG4Q86SJ6 1040 aa16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 CACUL1Q86Y37 369 aa16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 RGL4Q8IZJ4 473 aa16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 RPL10LQ96L21 214 aaKnown RBP16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 PSMB7Q99436 277 aa16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 ZYG11BQ9C0D3 744 aa16.47■□□□□ 0.23
CCDC88C-209ENST00000554872 SYCE3A1L190 88 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 SLC7A4O43246 635 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 GJB3O75712 270 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 RHOCP08134 193 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 GPD1P21695 349 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 ZNF143P52747 638 aaPredicted RBP16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 AIF1P55008 147 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 SEMA3BQ13214 749 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 SLC14A1Q13336 389 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 C15orf59Q2T9L4 293 aaPredicted RBP16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 WDR59Q6PJI9 974 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 MCOLN2Q8IZK6 566 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 IQCDQ96DY2 449 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 SELENOOQ9BVL4 669 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 MUC3BQ9H195 1237 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 C6orf106Q9H6K1 298 aaPredicted RBP16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 CBX8Q9HC52 389 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 TMPRSS4Q9NRS4 437 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 FBXL12Q9NXK8 326 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 NEU3Q9UQ49 428 aa16.46■□□□□ 0.23
CCDC88C-209ENST00000554872 LRRC53A6NM62 1247 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 MCF2LO15068 1137 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 MID1O15344 667 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 BCAT2O15382 392 aaPredicted RBP16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 KCNK5O95279 499 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 GZMAP12544 262 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 CEACAM1P13688 526 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 GOT1P17174 413 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 CD27P26842 260 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 OR1E1P30953 314 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 SLC8A1P32418 973 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 ETFBP38117 255 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 MAPKAPK2P49137 400 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 ATXN3P54252 364 aaPredicted RBP16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 TPM4P67936 248 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 SLC20A2Q08357 652 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 DNAJC24Q6P3W2 148 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 LRSAM1Q6UWE0 723 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 PIP4P1Q86T03 277 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 FAM124AQ86V42 546 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 NLRP14Q86W24 1093 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 MMAAQ8IVH4 418 aaKnown RBP16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 STK40Q8N2I9 435 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 OR2T34Q8NGX1 318 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 FAM172AQ8WUF8 416 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 OR8D1Q8WZ84 308 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 NAP1L5Q96NT1 182 aaPredicted RBP16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 ORAI3Q9BRQ5 295 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 KDM4CQ9H3R0 1056 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms