RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 LRRC40Q9H9A6 602 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 SLC12A8A0AV02 714 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 TCP11X1B4DZS4 312 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 TM9SF1O15321 606 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 TBX18O95935 607 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 SOD2P04179 222 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 SERPINB9P50453 376 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 NDST2P52849 883 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 SLC18A2Q05940 514 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 TRMT10BQ6PF06 316 aaKnown RBP26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 ARHGAP36Q6ZRI8 547 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 UMODL1-AS1Q8N2C9 162 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 CNTD1Q8N815 330 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 OR52K1Q8NGK4 314 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 MTBPQ96DY7 904 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 OXNAD1Q96HP4 312 aaPredicted RBP26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 ZNF558Q96NG5 402 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 TMEM248Q9NWD8 314 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 SYBUQ9NX95 663 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 BFARQ9NZS9 450 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 MPP6Q9NZW5 540 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 LTBP2Q14767 1821 aa26.91■■□□□ 1.9
CCDC88C-205ENST00000553403 CARNS1A5YM72 827 aa26.91■■□□□ 1.9
CCDC88C-205ENST00000553403 NPY2RP49146 381 aa26.91■■□□□ 1.9
CCDC88C-205ENST00000553403 SPANXN3Q5MJ09 141 aa26.91■■□□□ 1.9
CCDC88C-205ENST00000553403 PDZD8Q8NEN9 1154 aa26.91■■□□□ 1.9
CCDC88C-205ENST00000553403 FATE1Q969F0 183 aa26.91■■□□□ 1.9
CCDC88C-205ENST00000553403 TRIM56Q9BRZ2 755 aaKnown RBP26.91■■□□□ 1.9
CCDC88C-205ENST00000553403 HERC2P3Q9BVR0 1158 aa26.91■■□□□ 1.9
CCDC88C-205ENST00000553403 NDFIP2Q9NV92 336 aa26.91■■□□□ 1.9
CCDC88C-205ENST00000553403 VANGL2Q9ULK5 521 aa26.91■■□□□ 1.9
CCDC88C-205ENST00000553403 HBS1LQ9Y450 684 aaKnown RBP26.91■■□□□ 1.9
CCDC88C-205ENST00000553403 MYO18AQ92614 2054 aaKnown RBP26.91■■□□□ 1.9
CCDC88C-205ENST00000553403 NUP205Q92621 2012 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 TLR5O60602 858 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 KRT38O76015 456 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 CSH1P0DML2 217 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 CSH2P0DML3 217 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 DNAJB2P25686 324 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 FRG1Q14331 258 aaKnown RBP26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 CRYMQ14894 314 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 SNX30Q5VWJ9 437 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 C6orf89Q6UWU4 347 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 RGS9BPQ6ZS82 235 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 SH2D5Q6ZV89 423 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 MARK2Q7KZI7 788 aaKnown RBP26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 SLC39A11Q8N1S5 342 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 FCRL5Q96RD9 977 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 TGS1Q96RS0 853 aaKnown RBP26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 CLSTN3Q9BQT9 956 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 SAMD15Q9P1V8 674 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 AAR2Q9Y312 384 aaKnown RBP26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 FAM169AQ9Y6X4 670 aa26.9■■□□□ 1.9
CCDC88C-205ENST00000553403 DRGXA6NNA5 263 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 RPL17P18621 184 aaKnown RBP26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 PAPOLAP51003 745 aaKnown RBP26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 CRADDP78560 199 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 DSG1Q02413 1049 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 SLC1A5Q15758 541 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 ANO4Q32M45 955 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 SPOUT1Q5T280 376 aaKnown RBP26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 HHATQ5VTY9 493 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 TPGS2Q68CL5 300 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 NAPEPLDQ6IQ20 393 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 MIB1Q86YT6 1006 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 CDKL2Q92772 493 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 SERAC1Q96JX3 654 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 HTATIP2Q9BUP3 242 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 C11orf49Q9H6J7 331 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 GLOD4Q9HC38 313 aa26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 MKI67P46013 3256 aaKnown RBP26.89■■□□□ 1.9
CCDC88C-205ENST00000553403 TRIM49D1C9J1S8 452 aa26.89■■□□□ 1.89
CCDC88C-205ENST00000553403 EFCAB14O75071 495 aa26.89■■□□□ 1.89
CCDC88C-205ENST00000553403 ABLIM3O94929 683 aa26.89■■□□□ 1.89
CCDC88C-205ENST00000553403 POLBP06746 335 aa26.89■■□□□ 1.89
CCDC88C-205ENST00000553403 TAC1P20366 129 aa26.89■■□□□ 1.89
CCDC88C-205ENST00000553403 CNTFP26441 200 aa26.89■■□□□ 1.89
CCDC88C-205ENST00000553403 NIPAL4Q0D2K0 466 aa26.89■■□□□ 1.89
CCDC88C-205ENST00000553403 LINC00523Q86TU6 105 aa26.89■■□□□ 1.89
CCDC88C-205ENST00000553403 CCDC197Q8NCU1 140 aa26.89■■□□□ 1.89
CCDC88C-205ENST00000553403 PAIP2Q9BPZ3 127 aaKnown RBP26.89■■□□□ 1.89
CCDC88C-205ENST00000553403 NOL6Q9H6R4 1146 aaKnown RBP26.89■■□□□ 1.89
CCDC88C-205ENST00000553403 RC3H2Q9HBD1 1191 aaKnown RBP26.89■■□□□ 1.89
CCDC88C-205ENST00000553403 MAGED2Q9UNF1 606 aaPredicted RBP26.89■■□□□ 1.89
CCDC88C-205ENST00000553403 SHROOM3Q8TF72 1996 aa26.88■■□□□ 1.89
CCDC88C-205ENST00000553403 MAGEB16A2A368 324 aa26.88■■□□□ 1.89
CCDC88C-205ENST00000553403 ANXA9O76027 345 aa26.88■■□□□ 1.89
CCDC88C-205ENST00000553403 YTHDF3Q7Z739 585 aaKnown RBP26.88■■□□□ 1.89
CCDC88C-205ENST00000553403 SRLQ86TD4 932 aa26.88■■□□□ 1.89
CCDC88C-205ENST00000553403 CMTR2Q8IYT2 770 aaKnown RBP26.88■■□□□ 1.89
CCDC88C-205ENST00000553403 DNAAF3Q8N9W5 541 aa26.88■■□□□ 1.89
CCDC88C-205ENST00000553403 USP33Q8TEY7 942 aa26.88■■□□□ 1.89
CCDC88C-205ENST00000553403 APOPT1Q96IL0 206 aa26.88■■□□□ 1.89
CCDC88C-205ENST00000553403 CCSER2Q9H7U1 834 aa26.88■■□□□ 1.89
CCDC88C-205ENST00000553403 PIH1D1Q9NWS0 290 aaKnown RBP26.88■■□□□ 1.89
CCDC88C-205ENST00000553403 RRP15Q9Y3B9 282 aaKnown RBP26.88■■□□□ 1.89
CCDC88C-205ENST00000553403 TIMP1P01033 207 aa26.87■■□□□ 1.89
CCDC88C-205ENST00000553403 LAG3P18627 525 aa26.87■■□□□ 1.89
CCDC88C-205ENST00000553403 FOXN2P32314 431 aa26.87■■□□□ 1.89
CCDC88C-205ENST00000553403 NEK3P51956 506 aa26.87■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms