RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 CKAP5Q14008 2032 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 TBC1D3DA0A087WVF3 549 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 TBC1D3IA0A087WXS9 549 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 TBC1D3EA0A087X179 549 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 TBC1D3KA0A087X1G2 549 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 TBC1D3FA6NER0 549 aaPredicted RBP11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 DRGXA6NNA5 263 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 TBC1D3LB9A6J9 549 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 C1QTNF3-AMACRE9PGA6 284 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 F8VZ95 297 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 MCF2LO15068 1137 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 YKT6O15498 198 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 HYAL3O43820 417 aaPredicted RBP11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 CBFA2T3O75081 653 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 IGHV4-34P06331 123 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 TBC1D3HP0C7X1 549 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 ZNF18P17022 549 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 MZF1P28698 734 aaPredicted RBP11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 GRK6P43250 576 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 PSMD8P48556 350 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 SULT1E1P49888 294 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 CCT8P50990 548 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 CLCN6P51797 869 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 BNC1Q01954 994 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 SLC20A2Q08357 652 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 DLG2Q15700 870 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 ARL13BQ3SXY8 428 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 HSP90AA4PQ58FG1 418 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 C6orf118Q5T5N4 469 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 FAM102AQ5T9C2 384 aaPredicted RBP11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 TBC1D3GQ6DHY5 549 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 TBC1D3CQ6IPX1 549 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 ZNF783Q6ZMS7 281 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 TRIM72Q6ZMU5 477 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 RAB44Q7Z6P3 723 aaPredicted RBP11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 PRPF39Q86UA1 669 aaKnown RBP11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 XYLT1Q86Y38 959 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 TBC1D3Q8IZP1 549 aaPredicted RBP11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 STK40Q8N2I9 435 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 OR14C36Q8NHC7 312 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 FRS2Q8WU20 508 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 ALG14Q96F25 216 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 SIK2Q9H0K1 926 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 IL21RQ9HBE5 538 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 PIGVQ9NUD9 493 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 LMBRD1Q9NUN5 540 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 PPM1HQ9ULR3 514 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 HS3ST2Q9Y278 367 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 FNDC3AQ9Y2H6 1198 aaKnown RBP11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 OR51B4Q9Y5P0 310 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 SNX11Q9Y5W9 270 aa11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 TNRC6BQ9UPQ9 1833 aaKnown RBP11.18□□□□□ -0.62
VTI1BP3-201ENST00000550220 MAP1BP46821 2468 aaKnown RBP11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 KNL1Q8NG31 2342 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 LAMA1P25391 3075 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 CXorf51AA0A1B0GTR3 108 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 C1QTNF9BB2RNN3 333 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 ADCY5O95622 1261 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 FTH1P19P0C7X4 201 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 C1QTNF9P0C862 333 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 CDK4P11802 303 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 CD38P28907 300 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 CTSKP43235 329 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 STK19P49842 368 aaPredicted RBP11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 ADPRHP54922 357 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 FAM193AP78312 1265 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 OVGP1Q12889 678 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 RETSATQ6NUM9 610 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 NEK5Q6P3R8 708 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 SASS6Q6UVJ0 657 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 CIR1Q86X95 450 aaPredicted RBP11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 OXR1Q8N573 874 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 EPS8L1Q8TE68 723 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 GATA6Q92908 595 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 FAM131CQ96AQ9 280 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 CAMK1GQ96NX5 476 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 ORAI3Q9BRQ5 295 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 GDF3Q9NR23 364 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 ANO10Q9NW15 660 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 TMEM59LQ9UK28 342 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 AJAP1Q9UKB5 411 aaPredicted RBP11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 DMTF1Q9Y222 760 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 PCDH15Q96QU1 1955 aa11.17□□□□□ -0.62
VTI1BP3-201ENST00000550220 IGLV3-10A0A075B6K4 115 aa11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 ILVBLA1L0T0 632 aa11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 C10orf142B7Z368 130 aa11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 TNFSF14O43557 240 aa11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 LATO43561 262 aa11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 RNGTTO60942 597 aaKnown RBP11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 KRT37O76014 449 aa11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 RHOCP08134 193 aa11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 CCDC172P0C7W6 258 aa11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 PNMA6AP0CW24 399 aaPredicted RBP11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 SPINK2P20155 84 aa11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 OR1E1P30953 314 aa11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 SOX5P35711 763 aa11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 ETFBP38117 255 aa11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 STAT1P42224 750 aa11.16□□□□□ -0.62
VTI1BP3-201ENST00000550220 RECQLP46063 649 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms