RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 HOMER3Q9NSC5 361 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 ABCC13Q9NSE7 274 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 MTMR10Q9NXD2 777 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 EHD2Q9NZN4 543 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 PCDHB12Q9Y5F1 795 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 CDY1Q9Y6F8 540 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 SLC4A7Q9Y6M7 1214 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 GOLGA6L10A0A0M3HER8 536 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 A0A1W2PQH9 124 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 PRAMEF27A3QJZ7 478 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 IRAK2O43187 625 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 CEP104O60308 925 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 FGF18O76093 207 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 ATE1O95260 518 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 F9P00740 461 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 IGLV3-27P01718 113 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 ATP2A2P16615 1042 aaKnown RBP8.72□□□□□ -1.01
VPS29-203ENST00000546588 KDELR1P24390 212 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 IL4RP24394 825 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 BMPR1AP36894 532 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 HCAR3P49019 387 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 CXCR3P49682 368 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 DRG2P55039 364 aaKnown RBP8.72□□□□□ -1.01
VPS29-203ENST00000546588 DHX34Q14147 1143 aaKnown RBP8.72□□□□□ -1.01
VPS29-203ENST00000546588 DPYSL3Q14195 570 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 PPP2R5DQ14738 602 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 CCNG2Q16589 344 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 ERCC6LQ2NKX8 1250 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 BRMS1LQ5PSV4 323 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 ERMARDQ5T6L9 678 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 DAB2IPQ5VWQ8 1189 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 SYPL2Q5VXT5 272 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 SLC9A4Q6AI14 798 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 LILRA6Q6PI73 481 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 KLHDC10Q6PID8 442 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 MFSD7Q6UXD7 560 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 DENND5BQ6ZUT9 1274 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 HDXQ7Z353 690 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 SCD5Q86SK9 330 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 DEFB106AQ8N104 65 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 PDZD8Q8NEN9 1154 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 RAPGEF5Q92565 580 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 NKD2Q969F2 451 aaPredicted RBP8.72□□□□□ -1.01
VPS29-203ENST00000546588 ABHD8Q96I13 439 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 CAPZA3Q96KX2 299 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 SNRNP25Q9BV90 132 aaKnown RBP8.72□□□□□ -1.01
VPS29-203ENST00000546588 OSBPL8Q9BZF1 889 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 FAM129AQ9BZQ8 928 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 SOX17Q9H6I2 414 aaPredicted RBP8.72□□□□□ -1.01
VPS29-203ENST00000546588 ARHGEF38Q9NXL2 777 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 KLHL3Q9UH77 587 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 FZD10Q9ULW2 581 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 NEU2Q9Y3R4 380 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 NR2E1Q9Y466 385 aa8.72□□□□□ -1.01
VPS29-203ENST00000546588 LINC01553A4QN01 128 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 CCDC151A5D8V7 595 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 TMEM110-MUSTN1A8MSY1 372 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 KRIT1O00522 736 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 ADAM12O43184 909 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 PRPSAP2O60256 369 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 DNAJC6O75061 913 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 TJP3O95049 919 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 OLFM2O95897 454 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 URODP06132 367 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 HMGA1P17096 107 aaKnown RBP8.71□□□□□ -1.02
VPS29-203ENST00000546588 PFKLP17858 780 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 MCM3P25205 808 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 GRIK1P39086 918 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 CETN2P41208 172 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 PPP3CCP48454 512 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 YWHAGP61981 247 aaKnown RBP eCLIP8.71□□□□□ -1.02
VPS29-203ENST00000546588 KRT17Q04695 432 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 C2orf54Q08AI8 447 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 OASLQ15646 514 aaKnown RBP8.71□□□□□ -1.02
VPS29-203ENST00000546588 ELF2Q15723 593 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 LONRF2Q1L5Z9 754 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 RAB6CQ53S08 254 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 BSPRYQ5W0U4 402 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 AADACL2Q6P093 401 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 PRSS55Q6UWB4 352 aaPredicted RBP8.71□□□□□ -1.02
VPS29-203ENST00000546588 TMCO2Q7Z6W1 182 aaPredicted RBP8.71□□□□□ -1.02
VPS29-203ENST00000546588 PHLDB2Q86SQ0 1253 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 CEP57Q86XR8 500 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 VPS52Q8N1B4 723 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 TTC9BQ8N6N2 239 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 ATAD1Q8NBU5 361 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 DQX1Q8TE96 717 aaKnown RBP8.71□□□□□ -1.02
VPS29-203ENST00000546588 RIN2Q8WYP3 895 aaPredicted RBP8.71□□□□□ -1.02
VPS29-203ENST00000546588 TTC9Q92623 222 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 SLC39A13Q96H72 371 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 B3GALT6Q96L58 329 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 TM9SF2Q99805 663 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 RAB6CQ9H0N0 254 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 GDF3Q9NR23 364 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 MRPL17Q9NRX2 175 aaKnown RBP8.71□□□□□ -1.02
VPS29-203ENST00000546588 OLA1Q9NTK5 396 aaKnown RBP8.71□□□□□ -1.02
VPS29-203ENST00000546588 PIGVQ9NUD9 493 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 SMARCAL1Q9NZC9 954 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 REV1Q9UBZ9 1251 aa8.71□□□□□ -1.02
VPS29-203ENST00000546588 FBXW11Q9UKB1 542 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms