RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 A0A1W2PQH9 124 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 ARHGAP42A6NI28 874 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 PSMD3O43242 534 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 MAFKO60675 156 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 DNAJC6O75061 913 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 SNNO75324 88 aaPredicted RBP14.07□□□□□ -0.16
RTN3-210ENST00000540798 BPGMP07738 259 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 ITGA2BP08514 1039 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 PAX7P23759 505 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 OCRLQ01968 901 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 CDK18Q07002 472 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 GRTP1Q5TC63 336 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 RASSF3Q86WH2 238 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 ZNF419Q96HQ0 510 aaPredicted RBP14.07□□□□□ -0.16
RTN3-210ENST00000540798 C1orf74Q96LT6 269 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 BFARQ9NZS9 450 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 FNIP2Q9P278 1114 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 ADAM28Q9UKQ2 775 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 AP3B1O00203 1094 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 KIF3CO14782 793 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 MSI1O43347 362 aaKnown RBP14.07□□□□□ -0.16
RTN3-210ENST00000540798 USP12O75317 370 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 NEBLO76041 1014 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 DNAJB2P25686 324 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 GP5P40197 560 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 C1QTNF8P60827 252 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 OVGP1Q12889 678 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 PDE1CQ14123 709 aaPredicted RBP14.07□□□□□ -0.16
RTN3-210ENST00000540798 NFE2Q16621 373 aaPredicted RBP14.07□□□□□ -0.16
RTN3-210ENST00000540798 ANKRD20A4Q4UJ75 823 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 ARHGAP36Q6ZRI8 547 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 TBC1D1Q86TI0 1168 aaPredicted RBP14.07□□□□□ -0.16
RTN3-210ENST00000540798 MON1AQ86VX9 555 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 ZNF683Q8IZ20 524 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.07□□□□□ -0.163e-7■■■□□ 19.1
RTN3-210ENST00000540798 FCRL2Q96LA5 508 aaPredicted RBP14.07□□□□□ -0.16
RTN3-210ENST00000540798 SERPINB11Q96P15 392 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 MECRQ9BV79 373 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 LRMDAQ9H2I8 198 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 CATSPERBQ9H7T0 1116 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 SOX13Q9UN79 622 aa14.07□□□□□ -0.16
RTN3-210ENST00000540798 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.06□□□□□ -0.16
RTN3-210ENST00000540798 TPP1O14773 563 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 JCHAINP01591 159 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 PRKCGP05129 697 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 GPNMBQ14956 572 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 NUP93Q8N1F7 819 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 MAGEC3Q8TD91 643 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 KLHL29Q96CT2 875 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 IL22Q9GZX6 179 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 TLR6Q9Y2C9 796 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 HS3ST4Q9Y661 456 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 TRAFD1O14545 582 aaPredicted RBP14.06□□□□□ -0.16
RTN3-210ENST00000540798 SRGAP2BP0DMP2 458 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 ERVK-10P10266 1014 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 OR1G1P47890 313 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 INSCQ1MX18 579 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 VARS2Q5ST30 1063 aaKnown RBP14.06□□□□□ -0.16
RTN3-210ENST00000540798 ATG16L1Q676U5 607 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 RWDD4Q6NW29 188 aaKnown RBP14.06□□□□□ -0.16
RTN3-210ENST00000540798 CES3Q6UWW8 571 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 E2F7Q96AV8 911 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 SKA1Q96BD8 255 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 FCRL5Q96RD9 977 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 RBBP8Q99708 897 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 SAR1AQ9NR31 198 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 ABI2Q9NYB9 513 aaPredicted RBP14.06□□□□□ -0.16
RTN3-210ENST00000540798 ZFATQ9P243 1243 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 PHF24Q9UPV7 400 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 MTO1Q9Y2Z2 717 aaKnown RBP14.06□□□□□ -0.16
RTN3-210ENST00000540798 BRCA2P51587 3418 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 ARVCFO00192 962 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 MATN3O15232 486 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 GLRA3O75311 464 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 GNRH1P01148 92 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 BST1Q10588 318 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 CERCAMQ5T4B2 595 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 TEDDM1Q5T9Z0 273 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 LRRC8DQ7L1W4 858 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 CLNKQ7Z7G1 428 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 CCDC117Q8IWD4 279 aaPredicted RBP14.06□□□□□ -0.16
RTN3-210ENST00000540798 RTL3Q8N8U3 475 aaKnown RBP14.06□□□□□ -0.16
RTN3-210ENST00000540798 INPP5DQ92835 1189 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 PGLYRP2Q96PD5 576 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 TMEM237Q96Q45 408 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 SLC39A8Q9C0K1 460 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 SIK2Q9H0K1 926 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 FBXO44Q9H4M3 255 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 TRIM33Q9UPN9 1127 aa14.06□□□□□ -0.16
RTN3-210ENST00000540798 E9PAM4 449 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 TOP3BO95985 862 aaKnown RBP14.05□□□□□ -0.16
RTN3-210ENST00000540798 CSRP3P50461 194 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 MLLT6P55198 1093 aaPredicted RBP14.05□□□□□ -0.16
RTN3-210ENST00000540798 CDH17Q12864 832 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 PRPSAP1Q14558 356 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 FAM91A1Q658Y4 838 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 NAPEPLDQ6IQ20 393 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 LINC00523Q86TU6 105 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 ARHGAP18Q8N392 663 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 ATPAF2Q8N5M1 289 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms