RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 BGNP21810 368 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 HIRAP54198 1017 aaPredicted RBP14.36□□□□□ -0.11
USP3-204ENST00000540797 MBTD1Q05BQ5 628 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 PCID2Q5JVF3 399 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 SMG7Q92540 1137 aaKnown RBP14.36□□□□□ -0.11
USP3-204ENST00000540797 IL22Q9GZX6 179 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 ZNF112Q9UJU3 913 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.36□□□□□ -0.11
USP3-204ENST00000540797 FLOT2Q14254 428 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 MARK2Q7KZI7 788 aaKnown RBP14.36□□□□□ -0.11
USP3-204ENST00000540797 CHPFQ8IZ52 775 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 OR52K1Q8NGK4 314 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 USP6NLQ92738 828 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 PPP1R10Q96QC0 940 aaKnown RBP14.36□□□□□ -0.11
USP3-204ENST00000540797 ZNF670Q9BS34 389 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 SEZ6LQ9BYH1 1024 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 APPL1Q9UKG1 709 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 SOX13Q9UN79 622 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 RWDD3Q9Y3V2 267 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 LTBP3Q9NS15 1303 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 BTN3A1O00481 513 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 ZSCAN5DPP0CG00 497 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 HOXB8P17481 243 aaPredicted RBP14.35□□□□□ -0.11
USP3-204ENST00000540797 NFKB1P19838 968 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 CCDC153Q494R4 210 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 BRMS1LQ5PSV4 323 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 NEPROQ6NW34 567 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 AADACL2Q6P093 401 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 WDR48Q8TAF3 677 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 SEMA3CQ99985 751 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 CFAP97Q9P2B7 532 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 PADI4Q9UM07 663 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 A0A1W2PQH9 124 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 CCT8L1PA6NM43 557 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 CCL16O15467 120 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 ERBB2P04626 1255 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 SLC2A4P14672 509 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 ABL2P42684 1182 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 AQP5P55064 265 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 RPL7AP62424 266 aaKnown RBP14.35□□□□□ -0.11
USP3-204ENST00000540797 LRRC36Q1X8D7 754 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 SH3D19Q5HYK7 790 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 OSCP1Q8WVF1 389 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 CERS4Q9HA82 394 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 NINJ2Q9NZG7 142 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 STK39Q9UEW8 545 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 ZNF839A8K0R7 811 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 TBC1D4O60343 1298 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 HPGDP15428 266 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 TFE3P19532 575 aaPredicted RBP14.35□□□□□ -0.11
USP3-204ENST00000540797 PFKPQ01813 784 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 OCA2Q04671 838 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 ZNF384Q8TF68 577 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 BAP1Q92560 729 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 SEMA4DQ92854 862 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 FCRL2Q96LA5 508 aaPredicted RBP14.35□□□□□ -0.11
USP3-204ENST00000540797 OXCT2Q9BYC2 517 aaPredicted RBP14.35□□□□□ -0.11
USP3-204ENST00000540797 PRDM12Q9H4Q4 367 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 ASB8Q9H765 288 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 BRD9Q9H8M2 597 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.35□□□□□ -0.111e-6■■■■■ 35.6
USP3-204ENST00000540797 H3BMM5 538 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 GPR25O00155 361 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 CYP1A1P04798 512 aaPredicted RBP14.35□□□□□ -0.11
USP3-204ENST00000540797 ERCC2P18074 760 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 CYP3A5P20815 502 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 CAPZA2P47755 286 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 CLCNKBP51801 687 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 ACLYP53396 1101 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 ACTN3Q08043 901 aaPredicted RBP14.35□□□□□ -0.11
USP3-204ENST00000540797 MMRN1Q13201 1228 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 NAB1Q13506 487 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 FAM46CQ5VWP2 391 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 FUT10Q6P4F1 479 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 GET4Q7L5D6 327 aaPredicted RBP14.35□□□□□ -0.11
USP3-204ENST00000540797 C10orf53Q8N6V4 93 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 B4GALNT2Q8NHY0 566 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 CAVIN3Q969G5 261 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 LRRC39Q96DD0 335 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 EFCAB1Q9HAE3 211 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 ANKRD6Q9Y2G4 727 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 SLC45A1Q9Y2W3 748 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 TNNI3P19429 210 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 ALDH9A1P49189 494 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 ATP6AP1LQ52LC2 224 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 AMIGO3Q86WK7 504 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 NDOR1Q9UHB4 597 aa14.35□□□□□ -0.11
USP3-204ENST00000540797 NCANO14594 1321 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 UNCXA6NJT0 531 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 TMEM114B3SHH9 223 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 GPR1P46091 355 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 CLK2P49760 499 aaKnown RBP14.34□□□□□ -0.11
USP3-204ENST00000540797 CDK16Q00536 496 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 NFYCQ13952 458 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 RAET1GQ6H3X3 334 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 STX19Q8N4C7 294 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 FGFBP2Q9BYJ0 223 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 PARVBQ9HBI1 364 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 POLG2Q9UHN1 485 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 ARL5CA6NH57 179 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms