RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 CSRP3P50461 194 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 MXI1P50539 228 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 PLK1P53350 603 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 SKOR1P84550 965 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 SULT2A1Q06520 285 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 CNTN1Q12860 1018 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 CUL2Q13617 745 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 ISXQ2M1V0 245 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 POM121L1PQ3SYA9 428 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 KIAA1614Q5VZ46 1190 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 PMF1Q6P1K2 205 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 LCLAT1Q6UWP7 414 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 TMEM145Q8NBT3 493 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 FRS2Q8WU20 508 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 OR8D1Q8WZ84 308 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 GRAMD1AQ96CP6 724 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 EEF2KMTQ96G04 330 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 SLC39A13Q96H72 371 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 SLC46A1Q96NT5 459 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 SERPINB11Q96P15 392 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 USP29Q9HBJ7 922 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 PREBQ9HCU5 417 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 FOXD4L1Q9NU39 408 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 EVA1BQ9NVM1 165 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 NLGN3Q9NZ94 848 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 SARDHQ9UL12 918 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 PPM1HQ9ULR3 514 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 DOCK9Q9BZ29 2069 aa11.99□□□□□ -0.49
CLSTN3-209ENST00000539982 PIK3R2O00459 728 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 SCAMP1O15126 338 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 SLC31A1O15431 190 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 FBXO21O94952 628 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 FYNP06241 537 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 MYF5P13349 255 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 VASPP50552 380 aaPredicted RBP11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 YWHAEP62258 255 aaKnown RBP11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 NUCB2P80303 420 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 NNTQ13423 1086 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 AGBL4Q5VU57 503 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 CCDC81Q6ZN84 652 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 LGI2Q8N0V4 545 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 MAPK15Q8TD08 544 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 DQX1Q8TE96 717 aaKnown RBP11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 CLEC4CQ8WTT0 213 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 IFT43Q96FT9 208 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 DUSP23Q9BVJ7 150 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 IL17BQ9UHF5 180 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 SATB2Q9UPW6 733 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 MAPK8IP1Q9UQF2 711 aa11.98□□□□□ -0.49
CLSTN3-209ENST00000539982 LY6G6EA0A0G2JKS1 128 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 C1QTNF3-AMACRE9PGA6 284 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 MCF2LO15068 1137 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 ALOX15BO15296 676 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 RHOBTB3O94955 611 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 MOCS2O96007 188 aaPredicted RBP11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 ZNF18P17022 549 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 TACR2P21452 398 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 TAS2R38P59533 333 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 CNGA2Q16280 664 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 ACCSLQ4AC99 568 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 C3orf38Q5JPI3 329 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 RAP1GAP2Q684P5 730 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 NEK5Q6P3R8 708 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 PRICKLE2Q7Z3G6 844 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 GUF1Q8N442 669 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 IFI44Q8TCB0 444 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 TFAP2BQ92481 460 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 CCDC47Q96A33 483 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 HSFY1Q96LI6 401 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 PPP1R9BQ96SB3 815 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 TJP2Q9UDY2 1190 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 USP25Q9UHP3 1055 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 XPO7Q9UIA9 1087 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 NAALADL1Q9UQQ1 740 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 COQ4Q9Y3A0 265 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 PCDHGA8Q9Y5G5 932 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 U3KQA8 63 aa11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 NYNRINQ9P2P1 1898 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-209ENST00000539982 TDRD6O60522 2096 aaKnown RBP11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 A0A1W2PNU3 283 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 A0A1W2PQU0 124 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 K7ESM1 405 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 ATP9BO43861 1147 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 PAEPP09466 180 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 KRT10P13645 584 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 PDGFRAP16234 1089 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 PRLRP16471 622 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 TGM2P21980 687 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 OXCT1P55809 520 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 SRSF1Q07955 248 aaKnown RBP eCLIP11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 CCDC15Q0P6D6 951 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 DLG2Q15700 870 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 ZNF284Q2VY69 593 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 EDRF1Q3B7T1 1238 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 ARL13BQ3SXY8 428 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 FOXD4L6Q3SYB3 417 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 CBWD6Q4V339 395 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 ZCWPW2Q504Y3 356 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 CBWD3Q5JTY5 395 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms