RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 PLTPP55058 493 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 MFAP3P55082 362 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 CDR2Q01850 454 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 MDH1BQ5I0G3 518 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 SYCP2LQ5T4T6 812 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 GRAMD4Q6IC98 578 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 SDE2Q6IQ49 451 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 GPD1LQ8N335 351 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.53□□□□□ -1.04
NEDD8-207ENST00000533242 RNF25Q96BH1 459 aaPredicted RBP8.53□□□□□ -1.04
NEDD8-207ENST00000533242 ZFRQ96KR1 1074 aaKnown RBP8.53□□□□□ -1.04
NEDD8-207ENST00000533242 HSPA12BQ96MM6 686 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 NT5C1BQ96P26 610 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 FMO2Q99518 471 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 ELOVL4Q9GZR5 314 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 SNX25Q9H3E2 840 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 CD248Q9HCU0 757 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 HCN2Q9UL51 889 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 SH3BP1Q9Y3L3 701 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 ZFYVE26Q68DK2 2539 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 HMGB1P1B2RPK0 211 aaPredicted RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 PHF2O75151 1096 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 NDUFS2O75306 463 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 VNN1O95497 513 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 KRT5P13647 590 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 GNSP15586 552 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 NDUFV2P19404 249 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 YWHAQP27348 245 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 GNL1P36915 607 aaPredicted RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 MDH1P40925 334 aaKnown RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 CORO7P57737 925 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 WDR45BQ5MNZ6 344 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 LRIG3Q6UXM1 1119 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 NUP93Q8N1F7 819 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 NAT16Q8N8M0 369 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 TMC2Q8TDI7 906 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 IPO4Q8TEX9 1081 aaKnown RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 CPA5Q8WXQ8 436 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 FOXJ1Q92949 421 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 LRRC45Q96CN5 670 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 GABRG3Q99928 467 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 APOBEC3GQ9HC16 384 aaKnown RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 SPHK2Q9NRA0 654 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 KIAA1522Q9P206 1035 aaPredicted RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 DKK4Q9UBT3 224 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 CYP8B1Q9UNU6 501 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 NOVA2Q9UNW9 492 aaKnown RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 DAAM1Q9Y4D1 1078 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 NDUFAB1O14561 156 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 COCHO43405 550 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 GJB6O95452 261 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 MYZAPP0CAP1 466 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 PTPN1P18031 435 aaKnown RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 RRM1P23921 792 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 WASP42768 502 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 TUBP50607 506 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 SNRPFP62306 86 aaKnown RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 DUOXA2Q1HG44 320 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 HECTD3Q5T447 861 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 SNX30Q5VWJ9 437 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 EGFLAMQ63HQ2 1017 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 CCDC137Q6PK04 289 aaKnown RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 ANKS1BQ7Z6G8 1248 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 SLC13A5Q86YT5 568 aaPredicted RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 FMNL3Q8IVF7 1028 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 BBS7Q8IWZ6 715 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 RGL4Q8IZJ4 473 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 C1orf131Q8NDD1 294 aaKnown RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 OR5B17Q8NGF7 314 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 UHMK1Q8TAS1 419 aaKnown RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 ATG4AQ8WYN0 398 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 FBXO32Q969P5 355 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 MAGOHBQ96A72 148 aaKnown RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 MRPL45Q9BRJ2 306 aaKnown RBP8.52□□□□□ -1.05
NEDD8-207ENST00000533242 FAM114A2Q9NRY5 505 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 COMMD8Q9NX08 183 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 NME7Q9Y5B8 376 aa8.52□□□□□ -1.05
NEDD8-207ENST00000533242 A0A1B0GTW7 788 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 MIF4GDA9UHW6 222 aaKnown RBP8.51□□□□□ -1.05
NEDD8-207ENST00000533242 SPOPO43791 374 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 CBFA2T3O75081 653 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 ZNF883P0CG24 379 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 UNGP13051 313 aaPredicted RBP8.51□□□□□ -1.05
NEDD8-207ENST00000533242 CACNA2D1P54289 1103 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 MAGOHP61326 146 aaKnown RBP8.51□□□□□ -1.05
NEDD8-207ENST00000533242 GRIK2Q13002 908 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 CLEC16AQ2KHT3 1053 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 ANO4Q32M45 955 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 ACAD10Q6JQN1 1059 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 TMEM25Q86YD3 366 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 MIB1Q86YT6 1006 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 WDR49Q8IV35 697 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 PASD1Q8IV76 773 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 OR6B3Q8NGW1 331 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 MDM1Q8TC05 714 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 C1orf54Q8WWF1 131 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 B3GNT5Q9BYG0 378 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 ZNF518BQ9C0D4 1074 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 FAM107BQ9H098 131 aa8.51□□□□□ -1.05
NEDD8-207ENST00000533242 PCYOX1Q9UHG3 505 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms