RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	PSMC2	P35998	433 aa	Known RBP	12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	MXI1	P50539	228 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	VASP	P50552	380 aa	Predicted RBP	12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	KCNMA1	Q12791	1236 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	MS4A13	Q5J8X5	152 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	AGBL4	Q5VU57	503 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	NADSYN1	Q6IA69	706 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	PRICKLE2	Q7Z3G6	844 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	OR8D1	Q8WZ84	308 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	NDRG1	Q92597	394 aa	Known RBP	12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	SRRT	Q9BXP5	876 aa	Known RBP	12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	ABCG4	Q9H172	646 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	RAB20	Q9NX57	234 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	KIAA1257	Q9ULG3	409 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	TLR6	Q9Y2C9	796 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	HEMK1	Q9Y5R4	338 aa	Predicted RBP	12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	PIAS2	O75928	621 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	LTF	P02788	710 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	THEGL	P0DJG4	465 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	MAT2A	P31153	395 aa	Known RBP	12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	CTSO	P43234	321 aa	Predicted RBP	12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	OXCT1	P55809	520 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	RPS24	P62847	133 aa	Known RBP	12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	ISX	Q2M1V0	245 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	FSCB	Q5H9T9	825 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	TTC39B	Q5VTQ0	682 aa	Predicted RBP	12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	RESP18	Q5W5W9	173 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	NEK5	Q6P3R8	708 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	FOXD4L3	Q6VB84	417 aa	Predicted RBP	12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	CCDC81	Q6ZN84	652 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	TMC6	Q7Z403	805 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	APOLD1	Q96LR9	279 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	SLC46A1	Q96NT5	459 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	TRIM62	Q9BVG3	475 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	FAM117A	Q9C073	453 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	MMRN2	Q9H8L6	949 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	GDPD2	Q9HCC8	539 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	SATB2	Q9UPW6	733 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	NAV2	Q8IVL1	2488 aa		12.82	□□□□□ -0.36
CAPN1-223	ENST00000533079	COL27A1	Q8IZC6	1860 aa	Predicted RBP	12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	KNL1	Q8NG31	2342 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	CDRT15L2	A8MXV6	281 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079		O00370	1275 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	FFAR2	O15552	330 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	RTN2	O75298	545 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	TCEA3	O75764	348 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	FBXO21	O94952	628 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	NTRK1	P04629	796 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	GIMD1	P0DJR0	217 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	VDR	P11473	427 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	DEK	P35659	375 aa	Known RBP	12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	SRSF1	Q07955	248 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	CCDC15	Q0P6D6	951 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	ZSCAN23	Q3MJ62	389 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	DCAF6	Q58WW2	860 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	C3orf38	Q5JPI3	329 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	CAVIN1	Q6NZI2	390 aa	Known RBP	12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	ZCCHC8	Q6NZY4	707 aa	Known RBP	12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	MMS22L	Q6ZRQ5	1243 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	DCP2	Q8IU60	420 aa	Known RBP	12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	ARL14	Q8N4G2	192 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	TPCN2	Q8NHX9	752 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	WDR48	Q8TAF3	677 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	MAPK15	Q8TD08	544 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	FRS2	Q8WU20	508 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	ERCC4	Q92889	916 aa	Predicted RBP	12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	RPL10L	Q96L21	214 aa	Known RBP	12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	FCRL2	Q96LA5	508 aa	Predicted RBP	12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	PPP1R9B	Q96SB3	815 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	NUCKS1	Q9H1E3	243 aa	Known RBP	12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	UCKL1	Q9NWZ5	548 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	IL17B	Q9UHF5	180 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	SLCO3A1	Q9UIG8	710 aa		12.81	□□□□□ -0.36
CAPN1-223	ENST00000533079	BOD1L1	Q8NFC6	3051 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	KNTC1	P50748	2209 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	GOLGA6L4	A6NEF3	574 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	PYCARD-AS1	I3L0S3	204 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	SCAMP1	O15126	338 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	SART1	O43290	800 aa	Known RBP	12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	ACTN4	O43707	911 aa	Known RBP	12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	APOE	P02649	317 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	LCP1	P13796	627 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	HNRNPA2B1	P22626	353 aa	Known RBP	12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	AKT2	P31751	481 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	STK19	P49842	368 aa	Predicted RBP	12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	HNRNPK	P61978	463 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	CUL2	Q13617	745 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	STIL	Q15468	1287 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	LCLAT1	Q6UWP7	414 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	CLEC14A	Q86T13	490 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	GRAMD1C	Q8IYS0	662 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	APCDD1	Q8J025	514 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	IFI44	Q8TCB0	444 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	SEMA4D	Q92854	862 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	CCDC47	Q96A33	483 aa	Known RBP	12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	SLC39A13	Q96H72	371 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	TMEM63C	Q9P1W3	806 aa		12.8	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms