RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 FRMD1Q8N878 549 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 CTNNBL1Q8WYA6 563 aaPredicted RBP20.38■□□□□ 0.85
CPSF1-209ENST00000532725 PANX2Q96RD6 677 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 GPATCH2LQ9NWQ4 482 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 UVRAGQ9P2Y5 699 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 ANAPC7Q9UJX3 599 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 USP18Q9UMW8 372 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 SMG5Q9UPR3 1016 aaKnown RBP20.38■□□□□ 0.85
CPSF1-209ENST00000532725 PRPSAP2O60256 369 aa20.37■□□□□ 0.85
CPSF1-209ENST00000532725 IL1R2P27930 398 aa20.37■□□□□ 0.85
CPSF1-209ENST00000532725 MAPKAPK2P49137 400 aa20.37■□□□□ 0.85
CPSF1-209ENST00000532725 STK19P49842 368 aaPredicted RBP20.37■□□□□ 0.85
CPSF1-209ENST00000532725 LPAL2Q16609 132 aa20.37■□□□□ 0.85
CPSF1-209ENST00000532725 C9orf64Q5T6V5 341 aa20.37■□□□□ 0.85
CPSF1-209ENST00000532725 PRR23BQ6ZRT6 265 aa20.37■□□□□ 0.85
CPSF1-209ENST00000532725 KBTBD6Q86V97 674 aa20.37■□□□□ 0.85
CPSF1-209ENST00000532725 PSTKQ8IV42 348 aaKnown RBP20.37■□□□□ 0.85
CPSF1-209ENST00000532725 OR7D4Q8NG98 312 aa20.37■□□□□ 0.85
CPSF1-209ENST00000532725 OR2T3Q8NH03 318 aa20.37■□□□□ 0.85
CPSF1-209ENST00000532725 ZNF564Q8TBZ8 553 aaPredicted RBP20.37■□□□□ 0.85
CPSF1-209ENST00000532725 SNRNP25Q9BV90 132 aaKnown RBP20.37■□□□□ 0.85
CPSF1-209ENST00000532725 PRDM16Q9HAZ2 1276 aa20.37■□□□□ 0.85
CPSF1-209ENST00000532725 CTTNBP2NLQ9P2B4 639 aa20.37■□□□□ 0.85
CPSF1-209ENST00000532725 AP4E1Q9UPM8 1137 aa20.37■□□□□ 0.85
CPSF1-209ENST00000532725 CKAP5Q14008 2032 aa20.37■□□□□ 0.85
CPSF1-209ENST00000532725 MUC22E2RYF6 1773 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-209ENST00000532725 ABCA7Q8IZY2 2146 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 FAM186AA6NE01 2351 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 TARSL2A2RTX5 802 aaKnown RBP20.36■□□□□ 0.85
CPSF1-209ENST00000532725 WASH4PA8MWX3 477 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 EIF3CLB5ME19 914 aaKnown RBP20.36■□□□□ 0.85
CPSF1-209ENST00000532725 CREB3O43889 395 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 SNAP91O60641 907 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 TCF4P15884 667 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 FECHP22830 423 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 EPHB2P29323 1055 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 HOXD11P31277 338 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-209ENST00000532725 KRT83P78385 493 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 GNA12Q03113 381 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 BYSLQ13895 437 aaKnown RBP20.36■□□□□ 0.85
CPSF1-209ENST00000532725 PLK5Q496M5 336 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 BOLA3Q53S33 107 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 FAM160A2Q8N612 972 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-209ENST00000532725 FRS2Q8WU20 508 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 PTPRN2Q92932 1015 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 EIF3CQ99613 913 aaKnown RBP20.36■□□□□ 0.85
CPSF1-209ENST00000532725 EPAS1Q99814 870 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 DUSP15Q9H1R2 295 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-209ENST00000532725 DHX35Q9H5Z1 703 aaKnown RBP20.36■□□□□ 0.85
CPSF1-209ENST00000532725 ITM2CQ9NQX7 267 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 DNAI1Q9UI46 699 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 VPS51Q9UID3 782 aa20.36■□□□□ 0.85
CPSF1-209ENST00000532725 MBD1Q9UIS9 605 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-209ENST00000532725 ATP9BO43861 1147 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 SIN3BO75182 1162 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 ZNF217O75362 1048 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 ZMPSTE24O75844 475 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 LCA5LO95447 670 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 MT-CO1P00395 513 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 BCKDHBP21953 392 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 CDC25BP30305 580 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 HTR7P34969 479 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 NNMTP40261 264 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 LAIR1Q6GTX8 287 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 CCDC170Q8IYT3 715 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 RTL3Q8N8U3 475 aaKnown RBP20.35■□□□□ 0.85
CPSF1-209ENST00000532725 DCAF4L2Q8NA75 395 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 SLC35G2Q8TBE7 412 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 SIPA1Q96FS4 1042 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 KCTD15Q96SI1 283 aaPredicted RBP20.35■□□□□ 0.85
CPSF1-209ENST00000532725 SPON2Q9BUD6 331 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 C2orf49Q9BVC5 232 aaPredicted RBP20.35■□□□□ 0.85
CPSF1-209ENST00000532725 ACE2Q9BYF1 805 aaPredicted RBP20.35■□□□□ 0.85
CPSF1-209ENST00000532725 NOL6Q9H6R4 1146 aaKnown RBP20.35■□□□□ 0.85
CPSF1-209ENST00000532725 FBRSQ9HAH7 460 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 RAB23Q9ULC3 237 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 INTUQ9ULD6 942 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 HS3ST2Q9Y278 367 aa20.35■□□□□ 0.85
CPSF1-209ENST00000532725 FRYLO94915 3013 aa20.34■□□□□ 0.85
CPSF1-209ENST00000532725 EDDM13A0A1B0GTR0 161 aa20.34■□□□□ 0.85
CPSF1-209ENST00000532725 GLDCP23378 1020 aa20.34■□□□□ 0.85
CPSF1-209ENST00000532725 ACVRL1P37023 503 aa20.34■□□□□ 0.85
CPSF1-209ENST00000532725 TXNRD3NBQ6F5E7 133 aa20.34■□□□□ 0.85
CPSF1-209ENST00000532725 KIAA1324Q6UXG2 1013 aaKnown RBP20.34■□□□□ 0.85
CPSF1-209ENST00000532725 C11orf74Q86VG3 221 aa20.34■□□□□ 0.85
CPSF1-209ENST00000532725 SH2D3CQ8N5H7 860 aa20.34■□□□□ 0.85
CPSF1-209ENST00000532725 PRCCQ92733 491 aaPredicted RBP20.34■□□□□ 0.85
CPSF1-209ENST00000532725 ARHGEF2Q92974 986 aaKnown RBP20.34■□□□□ 0.85
CPSF1-209ENST00000532725 FAM129BQ96TA1 746 aa20.34■□□□□ 0.85
CPSF1-209ENST00000532725 RSPH9Q9H1X1 276 aaPredicted RBP20.34■□□□□ 0.85
CPSF1-209ENST00000532725 MAGEH1Q9H213 219 aa20.34■□□□□ 0.85
CPSF1-209ENST00000532725 CATSPERBQ9H7T0 1116 aa20.34■□□□□ 0.85
CPSF1-209ENST00000532725 OSGEPQ9NPF4 335 aa20.34■□□□□ 0.85
CPSF1-209ENST00000532725 CD93Q9NPY3 652 aa20.34■□□□□ 0.85
CPSF1-209ENST00000532725 USP36Q9P275 1121 aaKnown RBP20.34■□□□□ 0.85
CPSF1-209ENST00000532725 SLC25A13Q9UJS0 675 aa20.34■□□□□ 0.85
CPSF1-209ENST00000532725 IGHV1OR15-9A0A0B4J2B8 117 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 PROSCO94903 275 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 RARAP10276 462 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 VAV1P15498 845 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms