RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 BCKDHBP21953 392 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 HTR7P34969 479 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 PCK1P35558 622 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 STK19P49842 368 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-208ENST00000532560 PIGHQ14442 188 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-208ENST00000532560 LPAL2Q16609 132 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 RWDD4Q6NW29 188 aaKnown RBP15.43■□□□□ 0.06
CPSF1-208ENST00000532560 KIAA1324Q6UXG2 1013 aaKnown RBP15.43■□□□□ 0.06
CPSF1-208ENST00000532560 CYP4V2Q6ZWL3 525 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-208ENST00000532560 TMPRSS6Q8IU80 811 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 PSTKQ8IV42 348 aaKnown RBP15.43■□□□□ 0.06
CPSF1-208ENST00000532560 PYROXD2Q8N2H3 581 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 RLN3Q8WXF3 142 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 LOXL4Q96JB6 756 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 CCDC42Q96M95 316 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 PEBP4Q96S96 227 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 PSMB7Q99436 277 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 CHP1Q99653 195 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 C2orf49Q9BVC5 232 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-208ENST00000532560 MAGEB5Q9BZ81 275 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 SLC6A17Q9H1V8 727 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 PRDM16Q9HAZ2 1276 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 PRSS16Q9NQE7 514 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 NCDNQ9UBB6 729 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 SLC25A13Q9UJS0 675 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 ANAPC7Q9UJX3 599 aa15.43■□□□□ 0.06
CPSF1-208ENST00000532560 ZFHX2Q9C0A1 2572 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-208ENST00000532560 NYNRINQ9P2P1 1898 aaKnown RBP15.42■□□□□ 0.06
CPSF1-208ENST00000532560 A0A0D9SEW6 157 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 EDDM13A0A1B0GTR0 161 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 TARSL2A2RTX5 802 aaKnown RBP15.42■□□□□ 0.06
CPSF1-208ENST00000532560 TTC34A8MYJ7 566 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 PRPSAP2O60256 369 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 RETP07949 1114 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 H2AFZP0C0S5 128 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 MIPP30301 263 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 NNMTP40261 264 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 KRT83P78385 493 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 ELF2Q15723 593 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 ERMARDQ5T6L9 678 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 PMS2CLQ68D20 193 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 H2AFVQ71UI9 128 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 ZNF564Q8TBZ8 553 aaPredicted RBP15.42■□□□□ 0.06
CPSF1-208ENST00000532560 CTNNBL1Q8WYA6 563 aaPredicted RBP15.42■□□□□ 0.06
CPSF1-208ENST00000532560 PRCCQ92733 491 aaPredicted RBP15.42■□□□□ 0.06
CPSF1-208ENST00000532560 SIPA1Q96FS4 1042 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 RPL10LQ96L21 214 aaKnown RBP15.42■□□□□ 0.06
CPSF1-208ENST00000532560 SNRNP25Q9BV90 132 aaKnown RBP15.42■□□□□ 0.06
CPSF1-208ENST00000532560 PACSIN1Q9BY11 444 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 DUSP15Q9H1R2 295 aaPredicted RBP15.42■□□□□ 0.06
CPSF1-208ENST00000532560 USP36Q9P275 1121 aaKnown RBP15.42■□□□□ 0.06
CPSF1-208ENST00000532560 UVRAGQ9P2Y5 699 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 IP6K2Q9UHH9 426 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 VPS51Q9UID3 782 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 SLCO3A1Q9UIG8 710 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 MBD1Q9UIS9 605 aaPredicted RBP15.42■□□□□ 0.06
CPSF1-208ENST00000532560 USP18Q9UMW8 372 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 HS3ST2Q9Y278 367 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 INVSQ9Y283 1065 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 CHD5Q8TDI0 1954 aa15.42■□□□□ 0.06
CPSF1-208ENST00000532560 FAM186AA6NE01 2351 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 IGHV1OR15-9A0A0B4J2B8 117 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 CXorf51AA0A1B0GTR3 108 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 WASH4PA8MWX3 477 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 FGF10O15520 208 aaPredicted RBP15.41■□□□□ 0.06
CPSF1-208ENST00000532560 ATP9BO43861 1147 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 CREB3O43889 395 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 SNAP91O60641 907 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 RHOBTB1O94844 696 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 EPN2O95208 641 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 IGLV3-19P01714 112 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 TMEM253P0C7T8 217 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 EPHB2P29323 1055 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 ETFBP38117 255 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 NUMBP49757 651 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 GNA12Q03113 381 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 ZBTB16Q05516 673 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 SPDYCQ5MJ68 293 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 ZNF776Q68DI1 518 aaPredicted RBP15.41■□□□□ 0.06
CPSF1-208ENST00000532560 RTL3Q8N8U3 475 aaKnown RBP15.41■□□□□ 0.06
CPSF1-208ENST00000532560 OR7D4Q8NG98 312 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 FRS2Q8WU20 508 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 HINFPQ9BQA5 517 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 RSPH9Q9H1X1 276 aaPredicted RBP15.41■□□□□ 0.06
CPSF1-208ENST00000532560 CATSPERBQ9H7T0 1116 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 SPTLC3Q9NUV7 552 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 GPATCH2LQ9NWQ4 482 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 PCSK1NQ9UHG2 260 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 LCMT1Q9UIC8 334 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 CYP8B1Q9UNU6 501 aa15.41■□□□□ 0.06
CPSF1-208ENST00000532560 DMDP11532 3685 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 MYO1FO00160 1098 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 LRP3O75074 770 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 SIN3BO75182 1162 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 TPMTP51580 245 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 CLCN6P51797 869 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 ZNF135P52742 658 aaPredicted RBP15.4■□□□□ 0.06
CPSF1-208ENST00000532560 TPI1P60174 286 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 CA9Q16790 459 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 C9orf64Q5T6V5 341 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms