RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 KCNT1Q5JUK3 1230 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 OLFML1Q6UWY5 402 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 LRRC31Q6UY01 552 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 SLC26A9Q7LBE3 791 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 SLC47A2Q86VL8 602 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 IRF2BP1Q8IU81 584 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 GALNT15Q8N3T1 639 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 MSANTD4Q8NCY6 345 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 BAHD1Q8TBE0 780 aaPredicted RBP15.16■□□□□ 0.02
VPS28-215ENST00000531924 FEM1AQ9BSK4 669 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 NDST4Q9H3R1 872 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 WDCPQ9H6R7 721 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 PLCB1Q9NQ66 1216 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.16■□□□□ 0.02
VPS28-215ENST00000531924 FARP1Q9Y4F1 1045 aaPredicted RBP15.16■□□□□ 0.02
VPS28-215ENST00000531924 HS3ST4Q9Y661 456 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 A0A1B0GTQ1 180 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 ZZEF1O43149 2961 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 F9P00740 461 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 VAV1P15498 845 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 SULT1E1P49888 294 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 KRT83P78385 493 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 EIF4EBP2Q13542 120 aaPredicted RBP15.15■□□□□ 0.02
VPS28-215ENST00000531924 KCNJ12Q14500 433 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 HSP90AA4PQ58FG1 418 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 PRAMEF14Q5SWL7 426 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 CXorf57Q6NSI4 855 aaKnown RBP15.15■□□□□ 0.02
VPS28-215ENST00000531924 CCDC114Q96M63 670 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 ELF4Q99607 663 aaPredicted RBP15.15■□□□□ 0.02
VPS28-215ENST00000531924 ORAI3Q9BRQ5 295 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 TUBGCP2Q9BSJ2 902 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 TMEM51Q9NW97 253 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 CHMP5Q9NZZ3 219 aa15.15■□□□□ 0.02
VPS28-215ENST00000531924 YKT6O15498 198 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 SLC7A4O43246 635 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 RTN2O75298 545 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 RHOCP08134 193 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 PNMA6AP0CW24 399 aaPredicted RBP15.14■□□□□ 0.01
VPS28-215ENST00000531924 CLCN1P35523 988 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 NUDT1P36639 197 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 GGCXP38435 758 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 CDH4P55283 916 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 DEUP1Q05D60 604 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 CCDC15Q0P6D6 951 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 DLG2Q15700 870 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 POM121L1PQ3SYA9 428 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 PTPN20Q4JDL3 420 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 BRMS1LQ5PSV4 323 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 TMPRSS7Q7RTY8 843 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 ERICH1Q86X53 443 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 PROSER1Q86XN7 944 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 GATAD2AQ86YP4 633 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 FAM71AQ8IYT1 594 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 ATP11CQ8NB49 1132 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 ZNF397Q8NF99 534 aaPredicted RBP15.14■□□□□ 0.01
VPS28-215ENST00000531924 C18orf8Q96DM3 657 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 C2orf49Q9BVC5 232 aaPredicted RBP15.14■□□□□ 0.01
VPS28-215ENST00000531924 TKTL2Q9H0I9 626 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 KDM4CQ9H3R0 1056 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 CLSTN2Q9H4D0 955 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 SIX2Q9NPC8 291 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 AJAP1Q9UKB5 411 aaPredicted RBP15.14■□□□□ 0.01
VPS28-215ENST00000531924 LHX6Q9UPM6 363 aa15.14■□□□□ 0.01
VPS28-215ENST00000531924 NUMA1Q14980 2115 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 TLR4O00206 839 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 PLK4O00444 970 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 ALOX15BO15296 676 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 ATP9BO43861 1147 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 MAGEC1O60732 1142 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 LDOC1O95751 146 aaPredicted RBP15.13■□□□□ 0.01
VPS28-215ENST00000531924 ERCC5P28715 1186 aaPredicted RBP15.13■□□□□ 0.01
VPS28-215ENST00000531924 MAT2AP31153 395 aaKnown RBP15.13■□□□□ 0.01
VPS28-215ENST00000531924 VASPP50552 380 aaPredicted RBP15.13■□□□□ 0.01
VPS28-215ENST00000531924 STAT4Q14765 748 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 DRAP1Q14919 205 aaPredicted RBP15.13■□□□□ 0.01
VPS28-215ENST00000531924 ACBD5Q5T8D3 534 aaPredicted RBP15.13■□□□□ 0.01
VPS28-215ENST00000531924 FAM102AQ5T9C2 384 aaPredicted RBP15.13■□□□□ 0.01
VPS28-215ENST00000531924 TAF3Q5VWG9 929 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 NAPEPLDQ6IQ20 393 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 Q6ZVU0 165 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 C14orf80Q86SX3 495 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 OXR1Q8N573 874 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 FRS2Q8WU20 508 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 EBF2Q9HAK2 575 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 DYRK4Q9NR20 520 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 PIGVQ9NUD9 493 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 TOR4AQ9NXH8 423 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 TBC1D30Q9Y2I9 924 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 ZFHX4Q86UP3 3567 aa15.13■□□□□ 0.01
VPS28-215ENST00000531924 MCF2LO15068 1137 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 ADCY5O95622 1261 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 WNT1P04628 370 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 TPM2P07951 284 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 CYP11B1P15538 503 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 DRD3P35462 400 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 RECQLP46063 649 aaPredicted RBP15.12■□□□□ 0.01
VPS28-215ENST00000531924 CXCR3P49682 368 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 IRAK1P51617 712 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 PPP2CBP62714 309 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 PPP2CAP67775 309 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms