RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 GTF2H3Q13889 308 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 NRF1Q16656 503 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 C6orf10Q5SRN2 563 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 TMC7Q7Z402 723 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 HEATR4Q86WZ0 1026 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 FAM71AQ8IYT1 594 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 SCAIQ8N9R8 606 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 RSPH1Q8WYR4 309 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 NMUR2Q9GZQ4 415 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 VPS28Q9UK41 221 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 ASB3Q9Y575 518 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 KIF13AQ9H1H9 1805 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 A0A1W2PPM1 405 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 TMEM247A6NEH6 219 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 TSPAN3O60637 253 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 TGDSO95455 350 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 RPLP2P05387 115 aaKnown RBP13.38□□□□□ -0.27
TCOF1-213ENST00000514442 ME2P23368 584 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 WEE1P30291 646 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 DAB2P98082 770 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 FMO1Q01740 532 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 MAMLD1Q13495 774 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 NEDD8Q15843 81 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 EGFLAMQ63HQ2 1017 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 CLEC4FQ8N1N0 589 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 PGBD3Q8N328 593 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 BSNDQ8WZ55 320 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 PCDH18Q9HCL0 1135 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 GIN1Q9NXP7 522 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 MYPNQ86TC9 1320 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 RBM47A0AV96 593 aaKnown RBP13.37□□□□□ -0.27
TCOF1-213ENST00000514442 SAC3D1A6NKF1 404 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 HMGCRP04035 888 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 RHOCP08134 193 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 CCR1P32246 355 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 ELK3P41970 407 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 ABHD15Q6UXT9 468 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 ADCK2Q7Z695 626 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 TMEM110Q86TL2 294 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 PQLC1Q8N2U9 271 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 BHLHE22Q8NFJ8 381 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-213ENST00000514442 CDRT15Q96T59 188 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 ILKAPQ9H0C8 392 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-213ENST00000514442 NCF1BA6NI72 391 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-213ENST00000514442 NCF1CA8MVU1 366 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-213ENST00000514442 H3BNX3 289 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 ZNF197O14709 1029 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 NCF1P14598 390 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-213ENST00000514442 PSMA4P25789 261 aaKnown RBP13.37□□□□□ -0.27
TCOF1-213ENST00000514442 BMT2Q1RMZ1 405 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 TIGD7Q6NT04 549 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-213ENST00000514442 ASRGL1Q7L266 308 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 STRA8Q7Z7C7 330 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 IFNEQ86WN2 208 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 SLC9A9Q8IVB4 645 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 PCYOX1LQ8NBM8 494 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 HPS1Q92902 700 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 ZFYVE19Q96K21 471 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 LRRC40Q9H9A6 602 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 RBM22Q9NW64 420 aaKnown RBP eCLIP13.37□□□□□ -0.274e-6■■■■□ 24.3
TCOF1-213ENST00000514442 GPC6Q9Y625 555 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-213ENST00000514442 SQORQ9Y6N5 450 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 IGKV6D-41A0A0C4DH26 115 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 PHGDHO43175 533 aaKnown RBP13.37□□□□□ -0.27
TCOF1-213ENST00000514442 EGFRP00533 1210 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 ETS1P14921 441 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 PEX2P28328 305 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 PTPN7P35236 360 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 POU6F1Q14863 301 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 NT5DC4Q86YG4 428 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 SNX31Q8N9S9 440 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 RNF208Q9H0X6 261 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-213ENST00000514442 PSMD13Q9UNM6 376 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 STXBP5LQ9Y2K9 1186 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 PRR23AA6NEV1 266 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 ALOX5P09917 674 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 MYL4P12829 197 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 TUBP50607 506 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 CES3Q6UWW8 571 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 NPNTQ6UXI9 565 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 AMIGO2Q86SJ2 522 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 RIN3Q8TB24 985 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 SCUBE2Q9NQ36 999 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 TAS2R1Q9NYW7 299 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 KANSL3Q9P2N6 904 aa13.37□□□□□ -0.27
TCOF1-213ENST00000514442 TAF4O00268 1085 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 SERPINE1P05121 402 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 RALBP11234 206 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 MARSP56192 900 aaKnown RBP13.36□□□□□ -0.27
TCOF1-213ENST00000514442 TBX4P57082 545 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 SH3D19Q5HYK7 790 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 RGMBQ6NW40 437 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 LAYNQ6UX15 382 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 FAM183BPQ6ZVS7 135 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 MAGED4Q96JG8 741 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 SEMA6AQ9H2E6 1030 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 IL1RL2Q9HB29 575 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 CYP4F12Q9HCS2 524 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 TLR8Q9NR97 1041 aaKnown RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms