RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CPA6Q8N4T0 437 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 EXOC2Q96KP1 924 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 MUC3BQ9H195 1237 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 MRPS17Q9Y2R5 130 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 ACTL7AQ9Y615 435 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 TSPAN9O75954 239 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 TMCC1O94876 653 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 APOEP02649 317 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 CYP17A1P05093 508 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 FCARP24071 287 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 ETFBP38117 255 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 PI4KAP42356 2102 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 CXCL12P48061 93 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 TMED10P49755 219 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 MCCD1P59942 119 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 ZBTB17Q13105 803 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 NCAPHQ15003 741 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 DENND2CQ68D51 928 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 KDELC2Q7Z4H8 507 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 GRIN3AQ8TCU5 1115 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 DQX1Q8TE96 717 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 PDCD6IPQ8WUM4 868 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 HSPH1Q92598 858 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 FAM122AQ96E09 287 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 TM6SF2Q9BZW4 377 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 STK38LQ9Y2H1 464 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 NCAM2O15394 837 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 GPR37L1O60883 481 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 KATNA1O75449 491 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 STC2O76061 302 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 NFATC1O95644 943 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 CFIP05156 583 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 MAPK8P45983 427 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 STK19P49842 368 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 CNGA2Q16280 664 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 LONRF1Q17RB8 773 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 RNF219Q5W0B1 726 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 E4F1Q66K89 784 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 TCEAL6Q6IPX3 200 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 PPP1R2P3Q6NXS1 205 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 TMEM53Q6P2H8 277 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 ADGRG2Q8IZP9 1017 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 JOSD2Q8TAC2 188 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 ATP2A3Q93084 1043 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 TCEAL3Q969E4 200 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 HAUS1Q96CS2 278 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 CELF6Q96J87 481 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 C8orf48Q96LL4 319 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 SRPK1Q96SB4 655 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 GTPBP2Q9BX10 602 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 RAB23Q9ULC3 237 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 CYP8B1Q9UNU6 501 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 LUC7L2Q9Y383 392 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 TYW5A2RUC4 315 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 LGALS16A8MUM7 142 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 PI4K2BG5E9Z4 385 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 CBX4O00257 560 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 KCNK3O14649 394 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 AP5Z1O43299 807 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 ANP32DO95626 131 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 EFEMP2O95967 443 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 MSL3P1P0C860 447 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 HOXA9P31269 272 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 DGKGP49619 791 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 DAOAP59103 153 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 RPL7AP62424 266 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 COG7P83436 770 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 SEPT6Q14141 434 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 GAS6Q14393 721 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 UBALD2Q8IYN6 164 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 TSTD1Q8NFU3 115 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 CMASQ8NFW8 434 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 OR2I1PQ8NGU4 316 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 MYEOVQ96EZ4 313 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 TKTL2Q9H0I9 626 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 PALMDQ9NP74 551 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 ZFATQ9P243 1243 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 AGO1Q9UL18 857 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 PLA2G4CQ9UP65 541 aa8.1□□□□□ -1.11
LIMCH1-219ENST00000514096 TCRBV21S2A2A0A5A6 115 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 AP3B1O00203 1094 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 GABBR2O75899 941 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 SEC24DO94855 1032 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 VAV1P15498 845 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 ENDOUP21128 410 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 GPD2P43304 727 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 IRAK1P51617 712 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 CDK17Q00537 523 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 TBL3Q12788 808 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 COL9A2Q14055 689 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 GEN1Q17RS7 908 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 EGFLAMQ63HQ2 1017 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 DNAJC24Q6P3W2 148 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 CYB5D1Q6P9G0 228 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 C1orf210Q8IVY1 113 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 PYROXD2Q8N2H3 581 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 PJA1Q8NG27 643 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 PIGKQ92643 395 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 NXPE3Q969Y0 559 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms